| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_1452 |
|---|
| Symbol | |
|---|
| ID | 8543834 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 1964357 |
|---|
| End bp | 1969738 |
|---|
| Gene Length | 5382 bp |
|---|
| Protein Length | 1793 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 646386164 |
|---|
| Product | cysteine-rich repeat protein |
|---|
| Protein accession | YP_003265899 |
|---|
| Protein GI | 262194690 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | [TIGR02232] Myxococcus cysteine-rich repeat
[TIGR03382] Myxococcales GC_trans_RRR domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACACG ATAGAGAACT CCATCGAATT CCCCCGCCCG CATGGGCGCC CGGAGCGTCA
CGGCGATGGC TCCTGGGCGC ATCTGCGGCG ATCTTGGTGC TGATACCCGC GGCGGCGCAG
GCGCAGAGCA CGGTGATCGA CGAGTTCTCG CTGGGACAGC CGACGGTGGC CTCGAACGCC
AACAACGTCG AGGTTGCCTC GACCTCGGAT GGGGTGGACA GCAGCATCCT GGGCGGCGAG
CGCGACATCT CGGTGCGCCG CCTGGGTGGG GCTTCAGACG CGCGTATCGA AGCTTTCGGC
GACCCCGACG AGTTGACCTT CAGCACCGGC GGCGGCGGCA CCTTTGGTCA GGCGACGATC
GTCTGGGATG GCGACGACGA CGCGGCCGAG GTCGGCAACA TCGCGTTCAC CGGCCTGCGC
GACAGCGCCG ACGGGCCTGT GGACCTCAGC TTCGGCGGCC GCAGCGACTC GCTCGAGCTG
CGCACCACCT CGGGTGACAC CCTACCGCTC ACGGTGCGCA TCGAGCTATT CGCCGATGCC
GGCACCAGCG CGGTCATCTC CCGCACTCAG CCCAATGGCA ACCAGGTGCT GCGGTTCCGC
TTCTCGGACT TCACGGTGAG CGGCACGCCG GAGAACTTCG ACATCACCGA CGTGGGCGCC
ATTCGCCTCG ACTTCATCAC CGCCAGCGAC GCCGCCGGCC TCGACGTGGA CATCGATTTC
GTCCAGGGGT CCGCGAGTTT GCTCGTGCGC ATGGTCGACC AGGTGCTCGA CAGCAATGGC
GATCCCAAAG CCGAGCCCGC GGGACCGGGC GACATCATCC GCTACACGGT GACCATCGAG
AACCCCGACG ACAACGGCGA CCTGGCCAGC GCGGCGCAGG AGTTTGCCTT TGACCCGGCG
CTGCTGCCGG GCGGCGGCCT CACCACGCTG GTGCCGGGCT CGGTGTCTGT GCCCAACGCG
GGCTCGGCCG GCCTCACGGT CAACGAGGGC AACGGCGCGG GCGACAGCCG CGTGCTGGTG
GCCGTCGACC CGGTGGCCGA CCGCGCGGGC ACCGGCGCGT GTCCCGGTGA CAACAGCGTG
GCCGGCTGCC GCAGCTTCAG CTTCGACGTG CAGGTGCCGC GCACGCTGTC GCCCGCGCTG
CTGCGGGAGT TCGCCGAGGG CAGCTTTTTG CCCGCGCAGG GCTCGCTGAC CAGCGTCACG
GCGACGGGCA TCAGCACGAC GCTGCTCACC AACGATCCCG ATATCGCGAG TCCGGTGCGC
AGCGGCGGCG AGCCGCGCGA GAACCTCACG CTGGTGGCCG GCTTCTGCGG CAACGGCGAG
CTCGACCCGG GCGAGGGCTG CGACGGCGGC GGCGATCCCG ACGACTTCTG CACCGACGAG
TGCTTCATCG ACAGCGCCGA GAACTGCCCG CCCGACCAGA GCTGTCCCGC GCCCGGGTGC
ACGCCCGGCG ACGCCAACTG CCCCTCGTGC AACGACACCG CGCCGGGCGA GGTCGGCGAC
GATTCGTGCG CCAGCGGCTT CTGCAACCCG GATGCGGGCG TGTGCCAGGA GTGCGGTGAC
GGCGAGCTCG ACCCGGGCGA GGGCTGCGAC GACGGCAACG CCGCCAGCGG CGACGGCTGC
AGCGCGAGCT GTCTGATCGA GTCGATCGAG GAGGTCGGCG ACTGCGCGCT CGGCTCCTGC
ACGCCCCCGC CGGCCGATTG CACGCCCGGC AGCAGCGACT GTCCGCGTTG CAACGACGCC
GCGCCCGGCC GCACCGGCGG CGACTCGTGC GTCAGCGGCT TCTGCTCGCA GCTCGACGGC
GTCGCCGTGT GCATGAACTG CGGCAACGGC ACCATCGACG AGCGCGAGGG CTGCGATAAT
CCCGGACGCG CGGTCAGCGA AGAGTGCACG GCGAGCTGCC TCATCGCGAG CTGTCCCAGC
GGCAGCGACT GCGATCCGGC GTGTACGATC ACGCCCGGAG AGCCCAGCGA CCCGAGCTGC
CACGCGTGCA CGGGCGACGA GCTGTGCGAC AGCGGCGACT GCCGGGACAG CGGCGACGGC
GGCATCTGCG TGAGCGCGGG CTGCGGCGAC GGCGTGGTCG ACGACAACGA GGGCTGCGAC
GACGGCAACC GCGACAGCGG CGACGGCTGC AGCGCCACCT GTCTGATCGA GAGCTGCGTC
GGCTATCCCG ACTGCGATCG CGACTGCACC CACGTGCCCG GCGCGCCCTC GAACCAGCAG
CCGCCGTGCG CGCGCTGCAA CGACGAGGAA CCCGGACGCA CCGGCGACGA CTCGTGTGCC
GGTGGCTTCT GCGACCGCGA CGACGGCACC GGCGTGTGCA TCGACGTGGC CGTGTGTGGC
AACGGCGTGC TCGAGTTTGG CGAGGGCTGC GACGACGGCA ACACCGCGAA CGGCGACGGC
TGCAACGAGG TGTGCCGCAT CGAGAGTCTG GAGCGCGTGG GCGAGTGCCG CATCGACCAA
TGCACGGGCG GCGACAGCTC GTGCACGCCC GGCAGCCCGG GCTGCTCGGC CTGCAACACC
AGCGCCCCAG GCGAGATCGG CGACGCCTCG TGCGCCAGCG GTTTCTGCAA CGCCGACGGC
TTCTGCCAGG ACTGCGGCGA TGGCGACCTC GACAGCTTCG AGGGCTGCGA CGACGGCAAC
CTCGAGGGCG GCGACGCGTG CAGCGCGAGC TGCCGCATCG AGAGCTGCAT CGAGGGCGTG
AGCTGCGACC AGAGCGAGTG CGAGCCGGGC TCGCCCGACT GCCACGTGTG CAGCGACGAC
CAGGCCGGCG TCACCGGCGA CGACTCGTGC GAGAGCGGCT ACTGCATCCC GGGCACGAAC
GTGTGCGGCG TGCGCCAGCC GCGACTGGCC GGCGGCGGCT GCTCGGCCGG CGATGGCGGC
GTCGGGTTGG GCCTGGGCGT GCTGCTGCTG GCGTTCTTGG CCGCGTGGCG GCGGCGGCGC
GCGGTCGCCG TGGGTGTGCT CGTGAGCGCG AGCTTCATCG CGCCGGCCAC GGTCCGCGCC
CAGGACGACA CGCGCAACTT CTCGGCCGAG CGCTTCAAGC TGGCCAGCGA CAGCGACGGT
ATCCTGGGCG TCGAGTCCGG GACCGTGATC GGTCATCTCA ACTGGGATCT CGGGTTCTGG
CTCGGTTACG CCGACGATCC GCTGGCCCTG TACTTGGAGG AAGCGGGCGG CGACAACGAG
CGCGTGGATT CGTTTCTCAC CCGGCGCATC GGCGGCGAGG TGGTGGCCGT GCTCGGCTTC
GGCAAGCGGC TGCAGCTCGG CGTGCAGATT CCCGTGATCC TCGACCAGAA CTACAGCTTC
ATGGACACGG CCCTGGCGCC GCAGTCGAGC GCCGGGCTCG GCGATGTGAG CATTCATCCC
AAGCTGCAGC TCCTGTTTGC CGAGGATTTC GGCGTCGATG TCGCGATTCT GCCGATGCTG
ACCGTGCCCA GCCGGGGATC GGATTCGTAC TTCGGCGAGA GCACGTGGAG TTTTTCGCCC
ACGCTGGCGG TTTCCCGACA GATGGACCGC GTCGGGCTGG CCGGTAACAT CGGGTATCGC
CTGCGCAGCG ACAATCCCGA GGTCCTCGGA CTCGAGGTCG CCGATGAGTG GTTTGTACGC
GCGGGGGCCG GTGTGCGGGT CAACGACGAC GTGCAGCAGC CGCTATCGGT GAACGTATCG
GCGTCGCTGG CGACTTCGGC CGCCGATCTG TTCGGCGAGC TGGGCGGCAA CTACGCCGAG
GCGTTGGTGG GCGCCGACTA CTGGGTGGAT CGCGATTGGA AGCTGTTAGC CGGCGGCGGG
CTTGGGCTCA CGCCCGGGTT TGGTGCGCCC GACTGGCGCG TGCTGGCCGG CTTGCGCTAT
GCGCGTCGGC CGATGGAGTG CGCGGCGCCG CTGGTCGAGC GCGCGGGGGC GTGTGTGCAT
GACTGTCAGG CGCCGTATGT GGCCGAGGGC GACGATTGTG TGCTGCCGCC GTGTCCGGCC
GGGTATCAGC GGGTCGGCGA GGAGTGCGTG ATACCGGTGC AGTGCGGGGG CAATCCGCCC
AACAGCGACG CCGATTGCGA CGGTCTGCCG ACGCCGCCGT GGATTCTGCT GGGTCCGCCC
GAGGCCGCGT ACGATCCCGA GCGTCGCGAG CCGCGCGATC CCGAGCAGCC GGTCGATCCC
GGTGGTTATG CGTTCGGACA CGCGGTCCCG CCGCCGGCGG GCGAGGATGA GTTCCCGGCC
GATATCGAAC AATACGATTA CTGCCCGACG GTGCCCGGTG AGGCCAAGTA TCACGGCTGT
CCGGCGCCGA CGGTGGTGAC CGATACCTGC TCTGCGGATA GCGGACGCGG CGCGGTGCGG
GTTGCGCCCG AGCTGGCCTT TGTGCCCGGC AGCGCGCTGC TCAGCCTGCC GTCGCGGGTG
CCGCTGGAGG CGCTGGCCGA GCGCGCGGCC GCGGAGCCGG AGCTGCTGGT GGCGATCGAC
GTCGGCGGCG CTGGCGCCGA GCCCGGCTTG GCGCAGCGCC GGGCCGACGC CGTGGCCGCG
TTCCTGGCGA GTAAGGGCGT GGATCTCGGC CAGGTGTCCG TGCTCGGGCG CGGCGACGCG
GCGAGCGTGG GCGCGGACGA TGCCGCGACC TATCCGGTGC GCTTCGAGCG CCGCTGTCCG
AGCGAGATTC CGCCCACGAC GCTGTGTAAG GAGCTCGAGA TCGGTGACGA TTTCAAGATC
GCCTACGAGC TGAACTCGGC GAACTTGCAG GCTGCCTCGA AGGAGATGCT GGAGCGCGAC
GTGCTGTGGA TTCTGCGCGC GCATCCGCAG ATTCGCGTGG AGGTGCAGGG CCACACCAGC
GGCGAGGGCA AGCTGGCGTA CAACATGGAG CTGTCACAGC GACGGGCGCA GTCGGTGGTC
GACTTCCTGG TCGAACATGG CATCGAGGGC GAGCGTCTCA GCGCGGTGGG GCACGGGCCC
AAGGTGCCGC TGGTGACGCC CGAGAACAGT GAGGCCGACC GCGAACGGAA TCGGCGCATC
GAGTTCAGCA TCCAGCCGCG GCGCGAGTGC GGTACCTGCG AGAAGTTCCA GGTCGGCAAG
ATCCTGTTCG AGTTCAATAG CGGCGTGATC AAGGAGGAGT CGTTCCCGGA GCTCGACTCG
GTGGTGCGTA AGCTACAGTC CAACCCGGCG GTGCATCTGC TTATCGAGGG CCACACGAGC
AGCGAGGGCT CCGCCCGCTA CAATCGGCGG CTGTCGGGCG TGCGCGCGGC CTCGGTGCGC
AAGTACCTGG TCGAGCACGG CGTGGAGGCG AATCGGCTGG CGTCGAAGGG CGTCGGTGAG
GCGCAGCTCT TGATCGCACC GGATGACACC GAGGAGGCGC GCGAGACCAA CCGGCGCGTG
GAGTTCACGA TCACGCGCGG GCGGCCCGTT TGCCCGGATT GA
|
|---|
| Protein sequence | MKHDRELHRI PPPAWAPGAS RRWLLGASAA ILVLIPAAAQ AQSTVIDEFS LGQPTVASNA
NNVEVASTSD GVDSSILGGE RDISVRRLGG ASDARIEAFG DPDELTFSTG GGGTFGQATI
VWDGDDDAAE VGNIAFTGLR DSADGPVDLS FGGRSDSLEL RTTSGDTLPL TVRIELFADA
GTSAVISRTQ PNGNQVLRFR FSDFTVSGTP ENFDITDVGA IRLDFITASD AAGLDVDIDF
VQGSASLLVR MVDQVLDSNG DPKAEPAGPG DIIRYTVTIE NPDDNGDLAS AAQEFAFDPA
LLPGGGLTTL VPGSVSVPNA GSAGLTVNEG NGAGDSRVLV AVDPVADRAG TGACPGDNSV
AGCRSFSFDV QVPRTLSPAL LREFAEGSFL PAQGSLTSVT ATGISTTLLT NDPDIASPVR
SGGEPRENLT LVAGFCGNGE LDPGEGCDGG GDPDDFCTDE CFIDSAENCP PDQSCPAPGC
TPGDANCPSC NDTAPGEVGD DSCASGFCNP DAGVCQECGD GELDPGEGCD DGNAASGDGC
SASCLIESIE EVGDCALGSC TPPPADCTPG SSDCPRCNDA APGRTGGDSC VSGFCSQLDG
VAVCMNCGNG TIDEREGCDN PGRAVSEECT ASCLIASCPS GSDCDPACTI TPGEPSDPSC
HACTGDELCD SGDCRDSGDG GICVSAGCGD GVVDDNEGCD DGNRDSGDGC SATCLIESCV
GYPDCDRDCT HVPGAPSNQQ PPCARCNDEE PGRTGDDSCA GGFCDRDDGT GVCIDVAVCG
NGVLEFGEGC DDGNTANGDG CNEVCRIESL ERVGECRIDQ CTGGDSSCTP GSPGCSACNT
SAPGEIGDAS CASGFCNADG FCQDCGDGDL DSFEGCDDGN LEGGDACSAS CRIESCIEGV
SCDQSECEPG SPDCHVCSDD QAGVTGDDSC ESGYCIPGTN VCGVRQPRLA GGGCSAGDGG
VGLGLGVLLL AFLAAWRRRR AVAVGVLVSA SFIAPATVRA QDDTRNFSAE RFKLASDSDG
ILGVESGTVI GHLNWDLGFW LGYADDPLAL YLEEAGGDNE RVDSFLTRRI GGEVVAVLGF
GKRLQLGVQI PVILDQNYSF MDTALAPQSS AGLGDVSIHP KLQLLFAEDF GVDVAILPML
TVPSRGSDSY FGESTWSFSP TLAVSRQMDR VGLAGNIGYR LRSDNPEVLG LEVADEWFVR
AGAGVRVNDD VQQPLSVNVS ASLATSAADL FGELGGNYAE ALVGADYWVD RDWKLLAGGG
LGLTPGFGAP DWRVLAGLRY ARRPMECAAP LVERAGACVH DCQAPYVAEG DDCVLPPCPA
GYQRVGEECV IPVQCGGNPP NSDADCDGLP TPPWILLGPP EAAYDPERRE PRDPEQPVDP
GGYAFGHAVP PPAGEDEFPA DIEQYDYCPT VPGEAKYHGC PAPTVVTDTC SADSGRGAVR
VAPELAFVPG SALLSLPSRV PLEALAERAA AEPELLVAID VGGAGAEPGL AQRRADAVAA
FLASKGVDLG QVSVLGRGDA ASVGADDAAT YPVRFERRCP SEIPPTTLCK ELEIGDDFKI
AYELNSANLQ AASKEMLERD VLWILRAHPQ IRVEVQGHTS GEGKLAYNME LSQRRAQSVV
DFLVEHGIEG ERLSAVGHGP KVPLVTPENS EADRERNRRI EFSIQPRREC GTCEKFQVGK
ILFEFNSGVI KEESFPELDS VVRKLQSNPA VHLLIEGHTS SEGSARYNRR LSGVRAASVR
KYLVEHGVEA NRLASKGVGE AQLLIAPDDT EEARETNRRV EFTITRGRPV CPD
|
|---|
| |