| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_0458 |
|---|
| Symbol | |
|---|
| ID | 8542838 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 625867 |
|---|
| End bp | 629283 |
|---|
| Gene Length | 3417 bp |
|---|
| Protein Length | 1138 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 646385255 |
|---|
| Product | amidohydrolase |
|---|
| Protein accession | YP_003264992 |
|---|
| Protein GI | 262193783 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system
[COG1228] Imidazolonepropionase and related amidohydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.455594 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCACA GGACTCGCTC TCTCCCCCTG GCGCTGACCG CGTCGCTGGG TCTCGGGCTT
CTCGGCGCCT GCGCCGGAGC CAACTCGACC GCCCCCGACA GCGCTAACGC CACGCCTCAG
GCCCACGCCC AGGCCGCACC GCTCAGCTTT CACCCGCCCG CCGGTGCCGC CGCCGCGCCC
GCCAAAGACG GCGAGAAACC CAAATGGAAC GTCGAGCAGC CGCCGGGCCC GACCTTCGAG
GTGTCCATCG ACACCGACGA GGGCACCTGG ATGAGCCTCG ACCTGAGCCC CGACGGCAAG
GAGATCGTCT TCGATATGCT CGGCGACCTC TACACCCTGC CGATCGCGGG CGGCGAGGCC
AAGCCGCTGA CTTCGGGCAT CGCCTGGGAC ATGCAGCCGC GCTACAGCCC CGACGGCCGC
TTCATCGCCT TCACCAGCGA CCGCGGCGGC GGCGACAATC TGTGGATTAT CGACCGCCAG
GGCGAAAACC CGCGCCAGGT GTCGAGCGAG AATTTCCGCC TGGTCAACAG CCCGGCGTGG
ACGCCCGACG GCCAGTTCCT GGTCGGCCGC AAACACTTCA CCTCGCGCCG CAGCCTGGGC
GCCGGTGAGA TGTGGCTGTA TCACATCGCC GGCGGACAGG GCGTGCAGCT CACCGAGAAG
CAGAACGAGC AAAAGGATAC CGGCGAGCCG GTGTTCTCGC CCGACGGCCG CTATCTCTAC
TTCAGCCAGG ACTCCACACC CGGCCCGGTG TTCGAGTACA ACAAAGACCC GCACGCGGGC
ATTTATTCGA TCTACCGCCT GGACCGCGAA GAGGGCCACC TCGAGACGCT GATCTCGGGT
CCCGGCGGCG CGGTGCGGCC CACGCCCTCG CCCGACGGCA CGCGCATGGC CTACGTGCGC
CGCATCGGCC TCGACACCGC GCTCTTCGTC TACGATCTCG CGTCCGGCGA GCAGCGCCCC
GTGGTCGTCG GCCTCGACCG CGATATGCAG GAGACCTGGG CCATCCACGG CGTCTACCCG
ACGATGGCGT GGACCCCGGA CAACCGCTCG ATCGTGTTCT GGGCCGGCGG CAAGATCCAG
CGCGTGAGCA TCGGCGCCAA GGCCGGTGAG GACCGCGTGT CCGAAATCCC CTTCCACGTC
AAAGACACGC GCACGGTCAG CAAAGCGCTG CGCAGCCCGA TCGAGGTCGC GCCCGAGCGC
TTCCACACCC GCATGCTGCG CTCGGTGCAG GTCGCGCCCG ACGGCAGCGC GGCGGTGTAT
CAGGCGCTCG GCCACATCTA TCTGGTCGAT CTCGCCAACG GCCAGCCCAA GGGCGCGCCC
CGGCGGCTCA CGCGCGACGA CGATGTCTTC GAGTTCTATC CCTCGTTCTC GCGCGACGGC
CGCTCGATCG TATACGTGGC CTGGAGCGAC GAGCGCCTCG GCAGCGTGCG CATGATCGCA
CGCCGCGGCG GCCGCAGCCG CACGCTCACC AGCCAGCCCG GCCACTACGT CGAGCCCGTG
CTCTCGCCCG ACGGCAAGCA CCTGGTCTAC CGCAAGGTCG GCGCCAGCAG CGTGCGCGCG
CAGAGCTACA CCCACGACAC CGGCCTGTAC GCGCTCTCGC TCGCGGGCGG TGAGCCCGAG
CGCATCAGCC GCAGCGGCAA CAGCCCGCAT TTCGGCGGCG ACGGCAAGCG CGTGTTCTTC
CTCGACACCG AGGGCGGCGG CAGCGCGCAG AAGTTCCAGC TCGAGAGCGT CGGCATCGAC
GGCAAGGACG AGCGCGTGCA CCTGCGCAGC GACGCCGCGC TCGAGTACGC GGTCTCGCCC
GACGGCCGCT GGGTGGCGTT TCAGGAGTAC GCGGCCGCAT ACGTGGCGCC GTTCCCGCGC
ACGGCCAAGC CCATCGACAT CAGCCGCGAG TCCAAGGCTA TGCCGGTCAC CAAGGTGAGC
GCCGACGCCG GCGCCAACCT GCACTGGTCG GGCGACAGCG CGCACCTGTT CTGGTCGCTC
GGCCCCGAGC TGTACACGCG CGCGCTCACC GAGATGTTCG CGTTCGTCGA CGGCGCCGCC
GCGGAGCTGC CGCCGCTGGC CAGCCAGGGC GTGGACCTCG GCTTCGACGT CGCCACCGCC
AAGCCCGACA GCACCATCGC CCTGGTCGGC GGCAAGGCCG TGACCATGAA CGGCGACGAG
GTCATCGACG ACGCCGTGAT CGTCATCCGC GGCGACCGCA TCGCGGCCGT GGGTCCGCGC
GCGAGCGTGA CCATCCCGGC CGACGCGCGC CGCATCGATG TGAGCGGCAT GAGCGTCATC
CCCGGACTGA TCGACGTACA CGCGCACGGG CCGCAGGGCG GACACGGCAT CACGCCGCAG
CGCAACTGGC TGCACTACGC CACCCTGGCC TTCGGCGTCA CCACGGTGCA CGACCCGTCC
AACGACACCG GCGCGATCTT CGCCGCCTCC GAGCTGGCGC GCGCGGGCAT GATCACGGCG
CCGCGCATCT TCTCCACCGG CACCATCCTG TACGGCGCCA ACGCGCCCAT CAAAGCCGTG
GTCGACAGCT TCGACGACGC CCTGGCCAAC CTGCGGCGCA TGAAGGCCGT GGGCGCGTTC
AGCGTCAAGA GCTACAACCA GCCGCGCCGC GAGCAGCGCC AGCAGATCAT CGCCGCCGCG
CGCGAGCTGG ATATGATGGT CGTGCCCGAG GGCGGCTCGC TGTTCCAACA CAACATGAAC
ATGGTCGTCG ACGGCCACAC GGGCATCGAA CACGCGGTGC CGCTGGGCCG CGGCTACGCC
GATATGAAGC AGCTCTGGGG CGCGACCGAG GTCGGCTACA CGCCCACGCT CGGCGTCGGC
TACGGCGGCC TGTGGGGCGA GAACTACTGG TACGCGGAGA GCGACGTGTT CGCGCATCCG
CGCCTGACCA GCTTCGTGCC GCCCTTTGCC CACGAGGCGC GCACGCGCCG CCGGGTGCTG
GCCTCCGAGG GCGACTGGAA CCACATTCGC ATCGCCGCGC TGTGCAAAGA GCTGCTCGAC
GCCGGCGTCA AGATCCAGCT CGGCGCCCAC GGCCAGCGCG AGGGTCTGGC CGCGCACTGG
GAGCTGTGGA TGCTGGTTCA GGGCGGCATG TCGCCGCACG AGGCGCTGCG CGCCGGCACC
CTGCACGGCG CCTACTACCT GGGCCTCGAC GGCGACCTGG GCTCGATCGA GGCCGGCAAG
CTCGCCGACC TCGCGATCGT CGAAGGCGAC GTGCTGTCCG ATATCCGCCG CAGCGAGAAT
GTTCGCTACA CCATCGCCGG CGGTCGGGTG TACGATGCCG CGACCATGGA CCAAATCGCG
CCCGTCAGTA GCAAGCGCGC GCCATTCTTC TGGGAGCGCG ATGACGGCGC TGCCCATGTC
AGTCGCCCGG CCGACAGCGA AGGCCACGGC CTCGGCTGCT CCTGCGGCGC TCACTGA
|
|---|
| Protein sequence | MLHRTRSLPL ALTASLGLGL LGACAGANST APDSANATPQ AHAQAAPLSF HPPAGAAAAP
AKDGEKPKWN VEQPPGPTFE VSIDTDEGTW MSLDLSPDGK EIVFDMLGDL YTLPIAGGEA
KPLTSGIAWD MQPRYSPDGR FIAFTSDRGG GDNLWIIDRQ GENPRQVSSE NFRLVNSPAW
TPDGQFLVGR KHFTSRRSLG AGEMWLYHIA GGQGVQLTEK QNEQKDTGEP VFSPDGRYLY
FSQDSTPGPV FEYNKDPHAG IYSIYRLDRE EGHLETLISG PGGAVRPTPS PDGTRMAYVR
RIGLDTALFV YDLASGEQRP VVVGLDRDMQ ETWAIHGVYP TMAWTPDNRS IVFWAGGKIQ
RVSIGAKAGE DRVSEIPFHV KDTRTVSKAL RSPIEVAPER FHTRMLRSVQ VAPDGSAAVY
QALGHIYLVD LANGQPKGAP RRLTRDDDVF EFYPSFSRDG RSIVYVAWSD ERLGSVRMIA
RRGGRSRTLT SQPGHYVEPV LSPDGKHLVY RKVGASSVRA QSYTHDTGLY ALSLAGGEPE
RISRSGNSPH FGGDGKRVFF LDTEGGGSAQ KFQLESVGID GKDERVHLRS DAALEYAVSP
DGRWVAFQEY AAAYVAPFPR TAKPIDISRE SKAMPVTKVS ADAGANLHWS GDSAHLFWSL
GPELYTRALT EMFAFVDGAA AELPPLASQG VDLGFDVATA KPDSTIALVG GKAVTMNGDE
VIDDAVIVIR GDRIAAVGPR ASVTIPADAR RIDVSGMSVI PGLIDVHAHG PQGGHGITPQ
RNWLHYATLA FGVTTVHDPS NDTGAIFAAS ELARAGMITA PRIFSTGTIL YGANAPIKAV
VDSFDDALAN LRRMKAVGAF SVKSYNQPRR EQRQQIIAAA RELDMMVVPE GGSLFQHNMN
MVVDGHTGIE HAVPLGRGYA DMKQLWGATE VGYTPTLGVG YGGLWGENYW YAESDVFAHP
RLTSFVPPFA HEARTRRRVL ASEGDWNHIR IAALCKELLD AGVKIQLGAH GQREGLAAHW
ELWMLVQGGM SPHEALRAGT LHGAYYLGLD GDLGSIEAGK LADLAIVEGD VLSDIRRSEN
VRYTIAGGRV YDAATMDQIA PVSSKRAPFF WERDDGAAHV SRPADSEGHG LGCSCGAH
|
|---|
| |