| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_0351 |
|---|
| Symbol | |
|---|
| ID | 8542731 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 488576 |
|---|
| End bp | 490225 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 646385148 |
|---|
| Product | membrane-associated zinc metalloprotease |
|---|
| Protein accession | YP_003264885 |
|---|
| Protein GI | 262193676 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
|---|
| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATCG TCTACTTCCT TCTTTTAGTG GGCGTGCTCG TGGTCATCCA CGAGCTTGGC
CACTTCATCG CCGCCAAGCT GCTCGACTTC AAAGTCCTGC GTTTCTCGCT CGGTTTTGGT
CGTCCGCTGC TGCGCACACG CCTGGGCGAG ACCGAGTATC AGCTCGGCAT CATGCCGCTG
GGCGGCTATG TGCGCATCCT CGGCGAGGAC GGCGGCGACG ACGTGCCCTC GAGCGACGCG
GTGCGCTCGT TCCGCGGCAA ACCGCTGTGG CAGCGCCTGA TCGTGGTGTT TGCCGGACCC
ATGGCCAACC TGGTGTTCCC GGTGATCATC TACTTCACGC TGTTCGCCGG GCACAGCCAG
CTCCCGGCGG CCGTGGTCGG CGACGTGCTC GCCGATGCCC CGGCCGCGCG CGCGGGTCTG
GCCCCGGGCG ATCGCGTCGA GACCATCAAC GGCGAGCCCG TCCGCTACTG GGAAGAGCTC
GAGAACGCGG TCAAAGACAG CATCGGCCAG GAGCTGCGCC TGGGCCTGCG CCGCGGCGAC
AAGAGCTTCG AGAAGTACAT CGCGCCGGTC GAACAAATCG TCCGCACGCG CGACGGCGGC
GCCACCCGCC AGGGCTTCAT CGGCGTCACC CACGCGCCCT TCCTGCCCCT GGTCGGCGTG
GTCGACCCGG GCTCGCCCGC CGCTCAGGCC GGCCTGCGCA CCGGCGACCT GCTGATCAGC
ATCGACGGCG AGTCGGTCGC CAACTGGACC GAGGTAAAAG CCAAGCTGGC GCGCAACACC
CGCCGCACCA GCCTGGTGTA CCTGCGCGGG CGCGCGGCCC CGGGCGTGAG CTCGGTGCAT
CTGCTCGAGG CCCAGTTTGC CGACCTGGTG CCCGAAATCC GCCGCAGCGT GAGCGGCCGC
CAGCGCGTGT ACACCGGCCT CGAGCCGGCC GAGATGTTCG TCGCCCAGGT CGATCCCGGC
TCGCCCGCGG CCGCCGCCGG CCTGCGCCCG GGCGACCTCA TCACCGCGCT CGACGGCGAG
CCCATCGATC ACTGGATGGT GCTCGACCAG CGCCTGCAAG CCCGGCCCGA GCACACCTGG
ACGCTCACCT GGCAGCGCGC CGACGGCGAC CAGGTGGTCA TGCGCAGCGG CGAGCTGCGC
CAGCGCTGGA TCGAGGAGCG CGACGAGTAC GGCCACACCC AGACCCGCCT GGCCTTTGGC
GCGCACAGCG ACTTCGAGCG CGGCCGCGGC GAGCTGGTGC CGATCAAGGG CCGGGTGCAG
TACGCGTTCG AAAAAGCCAT GGGACGCAGC GCCGAGACCG TCGGCGCCAT GGTCTCGGGC
TTCACCGAGA TCCTGCGCGG TCAGGTACCC GGCGACAGCG TCGGCGGCCC GCTGATGATG
TACCGCGTGG CCTCGGTCTC GGGGCACAAG GGCTGGGACA GCTTTCTGCT CATGCTGGCG
CTCATCAGCG TCAACCTCGG CCTCATCAAC CTGCTGCCCG TGCCCGTGCT CGACGGCGGA
CACCTGGTCG TCTTCGCCGC CGAGGCCGTG CGCAAGCGGC CGCTGTCGCT CGCCGCCCGC
GCGCGCGTGC AGTACGTGGG CCTGGCCGTG GTCGGCGTCA TCACCGTGCT GGCGCTGCGC
AACGACGTGG TCCGCTACCT GCTGCAGTAG
|
|---|
| Protein sequence | MSIVYFLLLV GVLVVIHELG HFIAAKLLDF KVLRFSLGFG RPLLRTRLGE TEYQLGIMPL
GGYVRILGED GGDDVPSSDA VRSFRGKPLW QRLIVVFAGP MANLVFPVII YFTLFAGHSQ
LPAAVVGDVL ADAPAARAGL APGDRVETIN GEPVRYWEEL ENAVKDSIGQ ELRLGLRRGD
KSFEKYIAPV EQIVRTRDGG ATRQGFIGVT HAPFLPLVGV VDPGSPAAQA GLRTGDLLIS
IDGESVANWT EVKAKLARNT RRTSLVYLRG RAAPGVSSVH LLEAQFADLV PEIRRSVSGR
QRVYTGLEPA EMFVAQVDPG SPAAAAGLRP GDLITALDGE PIDHWMVLDQ RLQARPEHTW
TLTWQRADGD QVVMRSGELR QRWIEERDEY GHTQTRLAFG AHSDFERGRG ELVPIKGRVQ
YAFEKAMGRS AETVGAMVSG FTEILRGQVP GDSVGGPLMM YRVASVSGHK GWDSFLLMLA
LISVNLGLIN LLPVPVLDGG HLVVFAAEAV RKRPLSLAAR ARVQYVGLAV VGVITVLALR
NDVVRYLLQ
|
|---|
| |