| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_0252 |
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| Symbol | |
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| ID | 8542631 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | + |
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| Start bp | 372094 |
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| End bp | 375903 |
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| Gene Length | 3810 bp |
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| Protein Length | 1269 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 646385048 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_003264786 |
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| Protein GI | 262193577 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.760209 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCGCT TTAACAACAC CCCGCAACAC TTCGCCCCTC CGATGGCTCG CGCAGGCGCT
CCCCGCGCGC GCGGACGCTG GTCGCAGCGC GCCGCTGCGG TGACCCTGGC CGCGCTCGTG
GCCACGCTCG GCTCGCTGTC GAGCGCGTCG GCGCGGCCCG ACAAGAGCCG CATCCGCGCC
GTCGATCATC GCGAGGCGGG CGCGGTCGCC GGTACCATGC AGATCCGCAT CCGCGGCACG
CAGGAGCCGA CCTTCACGGT CTACAAGCTC GACTACCCGG CCCGCGTGGT GGTCGACATC
ACCGGCGCCG AGCTCGACCG CAAGCTCACG GGTGAGTCCG ACCACAAGGC GAGCTGGCCG
GTCAACGGCT GGGCCGTCAA TCAGCTCTCG GTCTACGAGC TGCACGACGT GGCCGGCGAC
GGCGCCTCGC AGGGCGGTCA CAGCCTGGTG CGCGTGGTCG TCGGTATGGC GCGTCCCGGC
ACCTACCACG CCGAGGCCCG GGGCCGCGAC GTGATGGTCA CGGTGACGCC GCAAGAGGCG
CAGCCGGCCG GCGTCGCGCC GGGACAGATC GAGGCCGCAA CCAAGGCGGT CGAGCAGGCC
GAGGCCCGGC GCAGCGCGGT GCTGGCCGAG GCCGAAGCCG CCGAGCGCCG CAAGCGCGCG
GCCGAGGGCG AGCGCGAGCG TCTCGCCAAG GCCCTGGCTC AGGCCGAGCA GGCGCGCTCC
GATGCCCGCT CGCAGGCCCA GGAGGCCGAG CGTCGCGCCG CGCAAGCGCG CGAGCTGCGC
GAGCGCGAGG AGGCCGCCTA CCGCGAGATC GCCGATGCCC GCCGCGAGGC CGAGCAGCGC
GCCGAGCAGG CGCGTGAGCT GCGCGAGCGC GAGGAGGCCG CCTATCGCCA GGCGACCGTC
GCCCGCCGCG AGGCCGAGCG CCGCAGCGCC GAGATCGGCG CCGCCGACGA TAAACTGAAT
GCATTGCAGA GCGCGGCCGC CGAGGCCCGC GCCGAAGTCG AGTCGCTGCG GCGCGCGGCC
GCCGAGGCCG AGCGCCGCGC CGCCGGCATG CGCGAGCGCA AGGACAGCAC CGAGCGCGAG
ATCGCGCGCG CCAAAGCCGA GGCCGAGCGC CAGGCCGGCG CGCTGCGCGA TGCCGAGCGC
ACGCTGAGCG CTCACAAGCG CGAGATCTCC AGCCAGGAGC GCGAAGTCGC CCGACTGTCC
AAAGTCCGCG GCGAAGCCGA GCGCGCGCTG CGCGATCTCG ACAGCGCGGC CAAAAAAGCC
CGCGCCGCCC GCGAGGCCGA AGAGGCGCAG CTCGCGACCC TGTCGCAGCG CCGCGATCAC
CTCGAGGGTG AGCTGGCCAC CGCGCGTTCG GCCATTCGCG AGGCCCAGGC CTCGTGGAAA
GCGCAGCGCA GCGAGGCCGA GGCGCAGCTC AATCAACTCG GACGCGCGGT CGACAATGCG
CGCGCCGAGC GTCTGGCCGA GGAGAAGCGC CTGAGCGAGC TGGCCGCGCG CCGCAAGCAG
CTCGAGGGCG AGATCGACCG CATCCGCCAG GAGCACGAGC GCGACGGCAA GTCCAGCTCG
CGCCGCGCCG CGGCCGAGAT GCGCGCGCTC GACAGCGCCC GCGTCGCCGA GGAGAAGCGC
ATCGCCGAGC TGGCCACGCG CCGCAAGCAG CTCGAGCGCG AGCTGCAGCA GGCCCGCGCC
AAGGTCCGCG TCGCGGCCCA GGCCGAGCAC AAGGCGCAGC GCAGCGAGGC CGACGCCGAG
CGCGAGGCGC TGGCCAAGGC CGTGGCCGCG GCCAAGCAGC AGCGCGCCGA AGAGGCCGAC
AAGATCGCCG AGCTGGGCAA GCGCCGCAGC GCGCTCGAGG CCTCGCTCGC GTCCATCCAC
GCCCAGGTCG AGGCCGCCGA GAACAGCCGC GCCCAGGCCG AGCGCGCCCG CCGCGCCGAG
GAGGCCAAGC TGGCCGAGCT GTCCGAGCGC CGCAAGACGG TCGAGAGCGA CCTGGCCGAG
CGCCAGCGCG CGGCCGACGC CAAGGCGAGC AAGCGCAAGC TGGCCAAGGC CAAGGCGGCC
AGCAAGGTCC GCGTCGAGGA GGTCGACTTC GTGGACGCCG ACGAGGTCGC GCGCGTGGTC
ATCGCGCTCT CCGACCGCGC CGATCCCAAG GTGGTGCGCG CCGAGGGCAA GCGCGTGGTG
CTCGAGATCG ACGACGTCAC GCTGCCGAGC AAGCTCGAGC GTACGCTCGA CACCAGCGCC
TACCGCGGCC CCATCCGCGC GGTGTCCTCG TACCGCTCGC CCGACGACGC CGACAAGATG
CGCCTGGTCG TGGACCTGGC CTATCCGGCC AAGCACGCGC TCAAGCGCTC CGGCAACTCG
CTGCTCTGGG ACTTCGCCAA GTCGGCCAAG CGCGAGCGCC AGGCCGCCCG CACCCAGTCG
GCGCGCAAGC GTCGCCCGAG CGGCAGCGCC CGCGCCCAGA GCATCCCGGC GCCCGTGGTC
GGCGGCTACG GCGCCGCGTC CACGCCCATC ACCCAGAAGA CCGTGGCCCA GCTCGCCAAT
CAGCGCCGCC GGGTCTACCG CGGCACCAAG ATCGACCTCG ATCTGCAGAA CGTGGACATC
CACAACGTGA TGCGCCTGCT GGCCGACGTC GGCGGCATCA ACATCGTGGT CCCCGACGAG
GTCTCGGCCG AGGTCACCGT GCGCCTGCGC CAGGTGCCCT GGGATCAGGC GCTCGAGGTC
ATCCTGGCCT CGAAGGGCCT GTGGTACCGG CGCGAGGGCA ACCTCTACCG CATCGCCACC
CGCAAGCAGC TCGACGCCGA GGCCGAGGCC GAGGCCGAGC GCATCGCGGC GCTGATCAAG
GCCGAGGCGC CCGAGCCGCA GATCTTCACC CTGAACTACG CGGTGGCCTC GCAGCTCAAG
CCGCAGCTCG AGGCGCTGCT GTCGCCCAAG GGCCGCATCG AGATCGACGA GCGCACCAAC
TCGCTGATCA TCAACGACGT CCGCGCGCAC CGCACGCGCA TCATCGACCT GCTCACGCGG
CTCGACACGC AGACGCCGCA GATTCAGATC GAGGCTCGCA TCGTCGAGGC GCGCTCGACC
TTCGCGCGCG AGTTCGGCGT GCAGTGGGGC GGCAGCCTGC TCGACGCCAA CACCGGCCTG
GTGTTCCCGG GCAACTACGG TGTGGTCGGC GGCAACACCG ACAGCCAGAC CGTGGGTACG
GGTGTGGCCG CTGCCTCGCC CGACTTCGCC GTCAACCTGC CGGCCGCGAC CGGTACCGGC
GCCGGTGGCG CGCTGGGCTT CGCCTTCGGC TCGGTCGGCG GCGGCCTCAA CCTGACGCTG
CGCCTCTCGG CCCTCGAGGA CACCGGCACG GTGCGCATCA TCTCGGCGCC GAAAATCACG
GTGCTCAACA ACGTCGAGGC CGAGATCAGC CAGGGCGTGT CGATTCCCAT CTCGGTCATC
TCGGCCAACG GCGTGCAGAC GCAGTTCGTC CAGGCCGACC TGAGCCTGGA GGTCACGCCG
CACGTGTCGC AGCGCGACTG CTCCATCGCC ATGGACCTGC AGATCCAGAA GAACGAGGCC
GACTTCGTCA ACACCGGTGC CCGCGGCGAC CCCACCATCC TGCGCAAGGA GGCCAGCACC
ACGGTGCTCG TCGCCGACAA CGAGACCACC GTCATCGGCG GCATCTACAC CCGCAACAGC
GGTCTCTCGT ACAGCAAGGT GCCGTTCCTC GGCGACCTGC CGCTGCTCGG CTGGCTGTTC
AAGAACCGCC GCGAGAACGA CGAGCGCACC GAGGTGCTGG TGTTCATCAC CCCGCGCATC
ACCAACAAGG CCTTCCTGCG CTGCGAGTAA
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| Protein sequence | MKRFNNTPQH FAPPMARAGA PRARGRWSQR AAAVTLAALV ATLGSLSSAS ARPDKSRIRA
VDHREAGAVA GTMQIRIRGT QEPTFTVYKL DYPARVVVDI TGAELDRKLT GESDHKASWP
VNGWAVNQLS VYELHDVAGD GASQGGHSLV RVVVGMARPG TYHAEARGRD VMVTVTPQEA
QPAGVAPGQI EAATKAVEQA EARRSAVLAE AEAAERRKRA AEGERERLAK ALAQAEQARS
DARSQAQEAE RRAAQARELR EREEAAYREI ADARREAEQR AEQARELRER EEAAYRQATV
ARREAERRSA EIGAADDKLN ALQSAAAEAR AEVESLRRAA AEAERRAAGM RERKDSTERE
IARAKAEAER QAGALRDAER TLSAHKREIS SQEREVARLS KVRGEAERAL RDLDSAAKKA
RAAREAEEAQ LATLSQRRDH LEGELATARS AIREAQASWK AQRSEAEAQL NQLGRAVDNA
RAERLAEEKR LSELAARRKQ LEGEIDRIRQ EHERDGKSSS RRAAAEMRAL DSARVAEEKR
IAELATRRKQ LERELQQARA KVRVAAQAEH KAQRSEADAE REALAKAVAA AKQQRAEEAD
KIAELGKRRS ALEASLASIH AQVEAAENSR AQAERARRAE EAKLAELSER RKTVESDLAE
RQRAADAKAS KRKLAKAKAA SKVRVEEVDF VDADEVARVV IALSDRADPK VVRAEGKRVV
LEIDDVTLPS KLERTLDTSA YRGPIRAVSS YRSPDDADKM RLVVDLAYPA KHALKRSGNS
LLWDFAKSAK RERQAARTQS ARKRRPSGSA RAQSIPAPVV GGYGAASTPI TQKTVAQLAN
QRRRVYRGTK IDLDLQNVDI HNVMRLLADV GGINIVVPDE VSAEVTVRLR QVPWDQALEV
ILASKGLWYR REGNLYRIAT RKQLDAEAEA EAERIAALIK AEAPEPQIFT LNYAVASQLK
PQLEALLSPK GRIEIDERTN SLIINDVRAH RTRIIDLLTR LDTQTPQIQI EARIVEARST
FAREFGVQWG GSLLDANTGL VFPGNYGVVG GNTDSQTVGT GVAAASPDFA VNLPAATGTG
AGGALGFAFG SVGGGLNLTL RLSALEDTGT VRIISAPKIT VLNNVEAEIS QGVSIPISVI
SANGVQTQFV QADLSLEVTP HVSQRDCSIA MDLQIQKNEA DFVNTGARGD PTILRKEAST
TVLVADNETT VIGGIYTRNS GLSYSKVPFL GDLPLLGWLF KNRRENDERT EVLVFITPRI
TNKAFLRCE
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