Gene Hoch_0219 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_0219 
Symbol 
ID8542598 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp321387 
End bp322298 
Gene Length912 bp 
Protein Length303 aa 
Translation table11 
GC content64% 
IMG OID646385015 
Productdiguanylate cyclase 
Protein accessionYP_003264753 
Protein GI262193544 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGAGT GGAAGACCCG CATAACCAAG GTCCAGTCCA TCCGGCCCCC CTCCGAAGTC 
GGACAGGGCT GCTTGGTACT GATCTATCCC CCTGGGCCGG ATATGGGAAA GCGTTTCCCC
CTGGAACAGG AGGAGTTCGT GCTCGGCCGC GGCGCCGACT GCGATATCCA GGTCGATTAC
GACTCGGTGT CGCGGCGTCA CGCGCGCGTC TACCGCGACA GCCAGGGCCG CTGGCTGGTC
GAGGATCTGG GCTCGACCAA CGGCTCCTAC GTCAACGACA TGCCGGTGCA GCGTTCGCCG
CTGCAGGACT CGAACTTTCT CAAGATCGGC GCCGCCATCT TCAAGTTCCT GCTCGGCGCA
GGCATCGAGG CCTCGTACTA CGAGGAGATC TACCGGATGA CCATCATCGA TGGTCTTACC
GGGGTGCACA ACAAGCGCTA CTTCGTCGAG TTCCTCGAGC GTGAGATCGC CCGCTGTGCC
CGCCATCAGC GGCCGCTGAC GCTGCTGATG TTCGACATCG ACCACTTCAA GCAGATCAAC
GACACCCACG GGCACCTCAC CGGCGACTAC GTGCTCAAGG AGATGTCGCG CCGGCTGCGC
GAGCGAATAC GCAAAGAGGA GCTGCTGGCG CGCTACGGCG GCGAGGAGTT CGCCGCGGTG
CTGCCCGAGA CCGATCACGT GGGCGGTATG ACCTTTGGCG AGCAGATCCG TCAGCTCGTC
GGTGGCGAGC CCTTCGAGTA CGAGGGCGAC CGCTTCCAGG TGACCATCTC GGTGGGCGTG
CACACGCTCT ACGGCCAGAG CCTCGACGTC AAAGGCTTCA TCAAGCACGC GGACGACAAC
CTCTATCGGG CCAAGCGCTC GGGTCGCAAC CGCGTGATCG GCATGGACAA CGCCTCGGGC
GTGCACTCCT AG
 
Protein sequence
MSEWKTRITK VQSIRPPSEV GQGCLVLIYP PGPDMGKRFP LEQEEFVLGR GADCDIQVDY 
DSVSRRHARV YRDSQGRWLV EDLGSTNGSY VNDMPVQRSP LQDSNFLKIG AAIFKFLLGA
GIEASYYEEI YRMTIIDGLT GVHNKRYFVE FLEREIARCA RHQRPLTLLM FDIDHFKQIN
DTHGHLTGDY VLKEMSRRLR ERIRKEELLA RYGGEEFAAV LPETDHVGGM TFGEQIRQLV
GGEPFEYEGD RFQVTISVGV HTLYGQSLDV KGFIKHADDN LYRAKRSGRN RVIGMDNASG
VHS