| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_0176 |
|---|
| Symbol | |
|---|
| ID | 8542555 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 265720 |
|---|
| End bp | 268053 |
|---|
| Gene Length | 2334 bp |
|---|
| Protein Length | 777 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 646384972 |
|---|
| Product | SNF2-related protein |
|---|
| Protein accession | YP_003264710 |
|---|
| Protein GI | 262193501 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.461992 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGCGA GCTCAAGCCC GCGCGTACGT CGTCCGGTCA CGGACTCGGC GTCCTGCGTC
CCCTGCATTC GCCTGTTTCG CGAGTCGCTG TTGTTCGACA GCGGCGACGG CTGGAGCGCG
GATTATCAAG AAGTCGACGT CGCCGTGATC CAGCTCGGCT TCGAGTACAG CGGCGTGCGC
GTGCGCATGG GCGATCCCGT CGATCGCGTG TTCCGCGCCA GCGGCAAGGG CACGAGCTGG
CTCGATCGCG ATCGCCGCGC CGAGGCGCAA GCGCAGTATC TGCTCGAAAG TTTCGGCGCC
GTCGAGATCG GGTGTCTGCA CGACTGCGCG GCGCCGCCCG ACTCGGCCGC CGATTATCTC
GTCCACCCCA GCGGCGACGT GCACGCGCTG TGCTCGTTCA GCGCCTACGC GCTGCCGCAA
CTGCGCTCGA TGGGCTGGCG CATCGACGTC GACGCCGCGT ATCCGTATCA GCTCGTGCCC
GCCGAGGCGC CGTGGTACGC CGAGATCGAG CCCGACGCGC AGACCGACTG GTTCGAGCTC
GAGCTCGGCG TCGAGGTCGA GGGCCGGCGC CTCAACCTGC TGCCCGCGCT GCTCGACTTG
CTCGACCGCA GCGCCGACAT CGACCACCTG GGCGATCTCT CGCGCGCCTC GGGTCGCTGC
GTGGCTCTGC CCACCGGCGA TGGCCGCTAC ATGCCGCTGC CGCACGAGCG CCTGCACAAC
CTGGTGTGCA CGCTGCTCGA GCTGTACCGC GGCGAGGAAG ACCGCGCCGC GCTGCGCTTC
CGCATCGACG CCGCCGCCGC GCTCGAACAC CTCGACGACG CCATCGCGCC CATGTGGCAC
GGCGCCCAGG AGGTCCGCGA ACGCGGCCGC CGGCTGGCCC GCCGCGGCTC CATGGAGACG
CTCAAGGCGA CGCCGCCCGC GGGCCTGCAA GCGACGCTGC GGCCGTATCA AGAGGCCGGC
CTGGCCTGGC TGCAGAGCCT GCGCGAACAC GACGCCGGCG GCGTGCTCGC CGACGACATG
GGCCTGGGCA AGACCCTGCA GACCATCTCG CACCTGGTGG CCGAAAAAGA AGCCGGACGC
CTGGACCAAC CCGCGCTGGT GGTCGCGCCC ACCAGCCTTG TCGGCAACTG GATGCGCGAG
ATGGCGCGCT TTGCCCCCAG CCTGCGCTGC CTGGCCATGC ACGGCAGCGG CCGCCACGCG
CTGTGGAAGC GGGTCGCCGA GTCCGACGTG GTCGTCACCA CCTACGGCCT GCTCATCCGC
GACCTCGAGC GCTTCCGCGA GCGCTCGTAT CACCTGCTGA TCCTCGACGA GGCGCAGGCC
ATCAAGAACC GCCGCAGCCA GGCGCACCGC GCGGTCAAAG CCGTCGACGC GCGCTTTCAT
CTGTGCATTT CCGGCACCCC GGTCGAAAAC GATCTCGAGG AGCTGTGGTC GCTGTTCGAC
GTGCTCATGC CCGACCTGCT CGGCTCCGCG GAGCAGTTCC GCAGCCTGTT CCGCTATCCC
ATCGAGAAGC AGCGCAGCCA GAGCCGTCTC GAGGCTCTGC GCGAGCGCGT GGCGCCCTAC
ATTCTGCGCC GCATGAAAGA GGACGTCGCG CCCGAGCTGC CGCCCAAGAC GGAGATCGTA
CGACCGGTCG CACTCACCGG CCTGCAGCGC GAACTCTACG AGAGCATCCG CATGTCGGCC
CACGCCGACG TGCGCAGCAT CATCCGCAAG AAGGGCCTGG CGGGCTCGGC CATCGCCATC
CTCGACGCGC TGATGAAGCT GCGCCAGGTG TGCTGCGATC CCCGGCTGGT GACCGTGCCC
TCGGCGCGCC GGGTCAAGGA ATCGGCCAAA TACGCGCTGT TTTTCGACCT CCTGTCCACC
CAGCGCGAGC AGGGCCGGCG CATCCTCGTG TTCTCACAAT TCACCAGCAT GCTGGCGCTG
CTGTCGCAGG GACTCGAAGA ACGCGGCGTC GCCCACAGCG TGCTCACGGG CGCCACCGCC
AACCGCCAGC GCGCGGTCGA CGAATTCCAG GAGGGCCGCA CCGAGGTCTT CCTCATCAGC
CTCAAGGCCG GCGGCACCGG GCTCAACCTC ACCCGCGCCG ATACCGTGGT GCACTACGAC
CCGTGGTGGA ACCCGGCCGC GCAGGCGCAG GCAACGGACC GCGCCTACCG CATCGGCCAG
ACCCGGCCGG TGTTCGTCTA CAACCTGATC ACGGCCGGCA GCGTCGAGGA GCGCATGCTG
GCCCTGCAGC AGCGCAAACG CCACCTGGCC GATACCATCC TCGGCCAGGG CGGCCCCTCG
AGCAGCTTCG ACGAGGGCGA GCTCGACGAG CTGTTCGCGC CGCTGAGCGA CTGA
|
|---|
| Protein sequence | MLASSSPRVR RPVTDSASCV PCIRLFRESL LFDSGDGWSA DYQEVDVAVI QLGFEYSGVR
VRMGDPVDRV FRASGKGTSW LDRDRRAEAQ AQYLLESFGA VEIGCLHDCA APPDSAADYL
VHPSGDVHAL CSFSAYALPQ LRSMGWRIDV DAAYPYQLVP AEAPWYAEIE PDAQTDWFEL
ELGVEVEGRR LNLLPALLDL LDRSADIDHL GDLSRASGRC VALPTGDGRY MPLPHERLHN
LVCTLLELYR GEEDRAALRF RIDAAAALEH LDDAIAPMWH GAQEVRERGR RLARRGSMET
LKATPPAGLQ ATLRPYQEAG LAWLQSLREH DAGGVLADDM GLGKTLQTIS HLVAEKEAGR
LDQPALVVAP TSLVGNWMRE MARFAPSLRC LAMHGSGRHA LWKRVAESDV VVTTYGLLIR
DLERFRERSY HLLILDEAQA IKNRRSQAHR AVKAVDARFH LCISGTPVEN DLEELWSLFD
VLMPDLLGSA EQFRSLFRYP IEKQRSQSRL EALRERVAPY ILRRMKEDVA PELPPKTEIV
RPVALTGLQR ELYESIRMSA HADVRSIIRK KGLAGSAIAI LDALMKLRQV CCDPRLVTVP
SARRVKESAK YALFFDLLST QREQGRRILV FSQFTSMLAL LSQGLEERGV AHSVLTGATA
NRQRAVDEFQ EGRTEVFLIS LKAGGTGLNL TRADTVVHYD PWWNPAAQAQ ATDRAYRIGQ
TRPVFVYNLI TAGSVEERML ALQQRKRHLA DTILGQGGPS SSFDEGELDE LFAPLSD
|
|---|
| |