Gene Hoch_0058 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_0058 
Symbol 
ID8542428 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp88165 
End bp89424 
Gene Length1260 bp 
Protein Length419 aa 
Translation table11 
GC content74% 
IMG OID646384845 
Product7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit 
Protein accessionYP_003264592 
Protein GI262193383 
COG category[H] Coenzyme transport and metabolism
[R] General function prediction only 
COG ID[COG1060] Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes 
TIGRFAM ID[TIGR03550] 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.161997 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAGCGCGG CCGGGCCCGG TGTCATCGCG CGCGCGGCCG AGCGCCCGCT GAGCGACGGC 
GAGCTGAGCG CGCTGGCCGA GCTCGACGCC GCCGCCCTCG AGCGCCGCAC CGGCGACCTG
ATGCGCGCGG CCGCCGAGCG GCGCGATCGC GCCTGGGGCC GGGCGCTCAG CTTCTCGCCC
AAAGTCTTTT TGCCGCTCAC CAACCTGTGT CGCGACGCCT GCGACTACTG CTCGTTCCGG
CGCTCGCCCA AGCAGGCGGG CGCCTGGACC ATGACCCCGC GCGAGGTCGA CACCTGGCTG
CGCCGCGGCC GCGCCCAGGG CTGCGTCGAG GCCCTGTTCT GCCTGGGTGA CACGCCCGAG
AGCGCGTTCC CCTCGTACCG GGCCCAGCTC GCGGGCTGGG GCCACGAGAG CACGGTGGCC
TATCTCGTGG CCGCCGGTGA GCGCGCGCTC GAGATGGGGC TTTTGCCGCA CACCAACGCC
GGCGTGCTCG GCTGCACCGA GATCGCCCTG CTCAAGCGCG TCAACGCCAG CCAGGGGCTG
ATGCTCGAGA GCGTGAGCCC GCGGCTGTGC GCGAAGGGCA TGCCCCACCA CCGGGCCCCG
GACAAGCGTC CGGAAAAACG CCTGGCCATG CTCGAGAGCG CGGGCGCGCT GCGGGTGCCC
TTCACCACCG GCATCCTGGT CGGCATCGGC GAGACCGAGC GCGAGCGCAT CGACTCGCTG
GTGGCCATCC GCGACCTGCA CCGCCGCTTC GGCCACATTC AAGAGGTCAT CGTCCAGCCC
TTCCGCGCGC GCCCGGCGGT GCCCATGGCG GCGGCGCCCG AGGCCGGCGA TCGCGAACTC
CTGCGCGCGA TCGCGCTGGC GCGCCTGATC CTCGATGACG AGGTCGCGGT GCAGACCCCG
CCCAACCTCG GCGCCTCGCA CACGGCCACC GCGGCCGAGG TGAGCGCCTT GCGCGGCGCC
GGAATCAACG ACTTCGGCGG CATCTCGCCG GTCACGCCCG ACTACATCAG CCCCGGCCAT
CCCTGGCCGC AGCTCGACGT CCTGGCCAGC GCCTGCGCCA GCGCGGGCGC GACCCTGGTC
CCGCGCCTGC CGGTGTATCC GCGCTACCTC GAGGAGTCCG ATTTCATCAG CGGCGCGGTG
CGCGCGCATC TGGCCGACGC GAGCGCGCGC CTGGCCACGA TGCGGATCAC CTTCGGAGTC
GCGAGCCCGG ACCCGAGTCT GCCCGCCGAA GCGGGCGCCG AAGCGGGAGT GCGCCGGTGA
 
Protein sequence
MSAAGPGVIA RAAERPLSDG ELSALAELDA AALERRTGDL MRAAAERRDR AWGRALSFSP 
KVFLPLTNLC RDACDYCSFR RSPKQAGAWT MTPREVDTWL RRGRAQGCVE ALFCLGDTPE
SAFPSYRAQL AGWGHESTVA YLVAAGERAL EMGLLPHTNA GVLGCTEIAL LKRVNASQGL
MLESVSPRLC AKGMPHHRAP DKRPEKRLAM LESAGALRVP FTTGILVGIG ETERERIDSL
VAIRDLHRRF GHIQEVIVQP FRARPAVPMA AAPEAGDREL LRAIALARLI LDDEVAVQTP
PNLGASHTAT AAEVSALRGA GINDFGGISP VTPDYISPGH PWPQLDVLAS ACASAGATLV
PRLPVYPRYL EESDFISGAV RAHLADASAR LATMRITFGV ASPDPSLPAE AGAEAGVRR