Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_0045 |
Symbol | |
ID | 8542415 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | + |
Start bp | 76248 |
End bp | 77075 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 646384833 |
Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
Protein accession | YP_003264580 |
Protein GI | 262193371 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0293315 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGATACCA GCAGACGCCG AAACCTCGTC AAGGGCGCGA TTGCGGAGCA TTGGCAGCCC TTGTTCAACT TCGCCTTTCG CATGACGCTC GACCGCGAGC GCGCGGGTAA GGCGACGGAA GAATGCTTTT TGCGCGCCTA CGTAGGAGCG GAGGATCTGC CCGAGGATGC CGAGCGCGCC GAGACGTGGC TGCTTCGCAT CTGCAGTCAC ATCCTCGAGC AGCAGCTACC GCGTCAGCCC GAGGTGAGCT TCGACATTCT CGACGAGACG CTGCGCAGCG AAGCCACGCG CACCGACGTG GTCCGCTCGC TCACCGATCC GCAGCGCGAC TTCATGCTCT GGGAGCTCAA GCAGGGCTGC ATGACGGCTG TCATCAACTG CCTGTCGCCG GGCGAGCGCG CGGCCTTCAT CATGGCCAAC ATCCTGCACA AGAGCGACGC CGACGCATCC AAGGCGCTCG GCATCAGCAA GAGCGCCTAC AAAGTCCGGC TGTCGCGTGC GCGCAAGAAG GTCGTCGATT ACCTGGCCCC GCGCTGCGAA CACGTCGATC CGATGAACCC ATGTCGCTGC CCGGCCCGCG TCGGCGTGGC CATGCACAAG GGCTTCATCC GCGGCCCCGG CGAGGTGCAG CTACGCAAGC CGGTCACCCC CTTTGGCCGC TACGGCGCCG GTCCCAAGAA CGAGGACGTA CCGCTGCGCG ATGTCTCGTC GATCTATCGC AATCTGCCCG AGCCCGAGAG CTCGCCCGGG TTCGTCGAGC GCATGCAGCA GAAGATCGAC AGCGGCCTGT GGGACCAGGT CCTCGAGAAG AAGCAGCAGC GCAAGTAG
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Protein sequence | MDTSRRRNLV KGAIAEHWQP LFNFAFRMTL DRERAGKATE ECFLRAYVGA EDLPEDAERA ETWLLRICSH ILEQQLPRQP EVSFDILDET LRSEATRTDV VRSLTDPQRD FMLWELKQGC MTAVINCLSP GERAAFIMAN ILHKSDADAS KALGISKSAY KVRLSRARKK VVDYLAPRCE HVDPMNPCRC PARVGVAMHK GFIRGPGEVQ LRKPVTPFGR YGAGPKNEDV PLRDVSSIYR NLPEPESSPG FVERMQQKID SGLWDQVLEK KQQRK
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