Gene Hoch_0045 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_0045 
Symbol 
ID8542415 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp76248 
End bp77075 
Gene Length828 bp 
Protein Length275 aa 
Translation table11 
GC content65% 
IMG OID646384833 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003264580 
Protein GI262193371 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0293315 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGATACCA GCAGACGCCG AAACCTCGTC AAGGGCGCGA TTGCGGAGCA TTGGCAGCCC 
TTGTTCAACT TCGCCTTTCG CATGACGCTC GACCGCGAGC GCGCGGGTAA GGCGACGGAA
GAATGCTTTT TGCGCGCCTA CGTAGGAGCG GAGGATCTGC CCGAGGATGC CGAGCGCGCC
GAGACGTGGC TGCTTCGCAT CTGCAGTCAC ATCCTCGAGC AGCAGCTACC GCGTCAGCCC
GAGGTGAGCT TCGACATTCT CGACGAGACG CTGCGCAGCG AAGCCACGCG CACCGACGTG
GTCCGCTCGC TCACCGATCC GCAGCGCGAC TTCATGCTCT GGGAGCTCAA GCAGGGCTGC
ATGACGGCTG TCATCAACTG CCTGTCGCCG GGCGAGCGCG CGGCCTTCAT CATGGCCAAC
ATCCTGCACA AGAGCGACGC CGACGCATCC AAGGCGCTCG GCATCAGCAA GAGCGCCTAC
AAAGTCCGGC TGTCGCGTGC GCGCAAGAAG GTCGTCGATT ACCTGGCCCC GCGCTGCGAA
CACGTCGATC CGATGAACCC ATGTCGCTGC CCGGCCCGCG TCGGCGTGGC CATGCACAAG
GGCTTCATCC GCGGCCCCGG CGAGGTGCAG CTACGCAAGC CGGTCACCCC CTTTGGCCGC
TACGGCGCCG GTCCCAAGAA CGAGGACGTA CCGCTGCGCG ATGTCTCGTC GATCTATCGC
AATCTGCCCG AGCCCGAGAG CTCGCCCGGG TTCGTCGAGC GCATGCAGCA GAAGATCGAC
AGCGGCCTGT GGGACCAGGT CCTCGAGAAG AAGCAGCAGC GCAAGTAG
 
Protein sequence
MDTSRRRNLV KGAIAEHWQP LFNFAFRMTL DRERAGKATE ECFLRAYVGA EDLPEDAERA 
ETWLLRICSH ILEQQLPRQP EVSFDILDET LRSEATRTDV VRSLTDPQRD FMLWELKQGC
MTAVINCLSP GERAAFIMAN ILHKSDADAS KALGISKSAY KVRLSRARKK VVDYLAPRCE
HVDPMNPCRC PARVGVAMHK GFIRGPGEVQ LRKPVTPFGR YGAGPKNEDV PLRDVSSIYR
NLPEPESSPG FVERMQQKID SGLWDQVLEK KQQRK