| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_2405 |
|---|
| Symbol | |
|---|
| ID | 8535569 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | - |
|---|
| Start bp | 2573878 |
|---|
| End bp | 2575530 |
|---|
| Gene Length | 1653 bp |
|---|
| Protein Length | 550 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 646384779 |
|---|
| Product | cytochrome c oxidase, subunit I |
|---|
| Protein accession | YP_003264261 |
|---|
| Protein GI | 261856978 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
|---|
| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCACT CCTCTGAACA TGTCTTGCAC AGTACCGCAG CAGACACCAC GATCGGTCAC
GTCCATGAGC ACGACGCGCA CCACGGTCCC CGAAAAGGCA TCCTGCGCTG GCTGTTAACG
GTGAACCACA AGGCTGTGGG CACCATGTAC TTGGTGCTCA GCCTGGTGGG CCTCATGGTG
GGCGGGGTGA TGGCACTGAT GATCCGCTCG GAGCTGTTCC AACCGGGCAT GCAACTGATG
CAGCCGCAAT TCTTCAACTC GCTAACGACC ATGCACGGTC TGACGATGAT TTTCCTCGCC
ATCATGCCGG GTCTGACCGG GTTGGCGAAC TGGATGGTGC CGCTTCAAAT CGGTGCGGAT
GACATGTATT GGCCTCGAGT CAACAACTGG GCTTTCTGGG CCATGCCCCC AGCAGCGATC
ATTCTCTGGA GCACGTTCTT TATTCATGGG GGTGCTCCAA ACGGTGGATG GACGTTCTAC
CCGCCGTTAT CCGGCAGCTT CGGACCGGAA TCGATCGACT GGATGATCGT TTCCATCCAC
ATCATGGGGG TTTCGTCGTT CTTCGGTGCG CTGAACATCA TCCTCACCAT CCTGAAGATG
AGGGCACCGG GTATGAAGCT GATGGATATG CCCCTATTCA GCTGGTCGTG GCTGATTACC
GGCTTTTTGT TCCTGCTGGC CATGCCCACC TTGGCCATTG CCGCGACCAT GGTGTTGTCG
GATCGCCATT GGGGTACTCA TTTCTTTGAA GCGGGCGGGA ACCCGGTGTT GTTCCAACAC
ATCTTCTGGT TTTTCGGCCA TCCCGAAGTC TACATCATGA TTTTGCCGGC ATTCGGCATC
ATCTCCGAAG TGGTTCCGGC GTTCTCACGC AAACCCATCT TTGGGCGTAA ATCGATGTTT
TACGCGACGG CCGTCATCAC GTTCCTGGCG ACGATCGTCT GGGCGCACCA CATGTTTACG
GTCGGGTTGC CGGTTTGGGG GCAGTTATTC TTCATGTACT CCACCATGCT GATCTCGGTG
CCCACCGGCA TCAAGATCTT CAACTGGGTT GCGACCATGT GGCGCGGGTC TCTGAGCTTC
GAAGCGCCAA TGCTCTGGGC AATCGCGTTC ATCATATTGT TTACCATCGG TGGATTTTCC
GGCGTGATGC TCGCCAACGT AGCCGCAGAT TATCAGTACC AAGATACCTA TTTCGTGGTT
GCGCATTTTC ACTATGTGCT GGTGAGCGGC TCTCTGTTCG GCATATTTGC CGGCGTGTAC
TACTGGCTGC CCAAGTGGAC TGGGCATCTG TACGACGAAC GCCTCGCCCA ATGGCACTTT
TGGTTATCGG TGATCTCGAT GAACATCACC TTTTTCCCCA TGCATTTCGC TGGCTTGGCC
GGCATGCCGC GCCGGATTCC CGACTACGCG GTTCAATTCA CGGATTTCAA TATGATTTCA
ACAGTCGGCG CCTTCATCTT TGGCTTCTCA CAATTGATTT TTATCGTGGT TTTGATCAAG
GCCTATCGCG GTGGAAAAGC AGCGGGAGCC CGGCCATGGG ATGGCGCAAG GGGGCTGGAG
TGGGTCATCC CTTCGCCCGC GCCTTACCAC ACGTTTACCA CGCCACCGAC CGCCAAGCAG
TTGCATGACG AAGGTCCCAA GGCGTACGAG TGA
|
|---|
| Protein sequence | MNHSSEHVLH STAADTTIGH VHEHDAHHGP RKGILRWLLT VNHKAVGTMY LVLSLVGLMV
GGVMALMIRS ELFQPGMQLM QPQFFNSLTT MHGLTMIFLA IMPGLTGLAN WMVPLQIGAD
DMYWPRVNNW AFWAMPPAAI ILWSTFFIHG GAPNGGWTFY PPLSGSFGPE SIDWMIVSIH
IMGVSSFFGA LNIILTILKM RAPGMKLMDM PLFSWSWLIT GFLFLLAMPT LAIAATMVLS
DRHWGTHFFE AGGNPVLFQH IFWFFGHPEV YIMILPAFGI ISEVVPAFSR KPIFGRKSMF
YATAVITFLA TIVWAHHMFT VGLPVWGQLF FMYSTMLISV PTGIKIFNWV ATMWRGSLSF
EAPMLWAIAF IILFTIGGFS GVMLANVAAD YQYQDTYFVV AHFHYVLVSG SLFGIFAGVY
YWLPKWTGHL YDERLAQWHF WLSVISMNIT FFPMHFAGLA GMPRRIPDYA VQFTDFNMIS
TVGAFIFGFS QLIFIVVLIK AYRGGKAAGA RPWDGARGLE WVIPSPAPYH TFTTPPTAKQ
LHDEGPKAYE
|
|---|
| |