| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_2298 |
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| Symbol | |
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| ID | 8535462 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | - |
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| Start bp | 2469032 |
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| End bp | 2473048 |
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| Gene Length | 4017 bp |
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| Protein Length | 1338 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 646384673 |
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| Product | YD repeat protein |
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| Protein accession | YP_003264155 |
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| Protein GI | 261856872 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATAAATA AGTCTTGTAC TAATCAAACT CAAACGGGCG TGAAACCCCA AGTTCAAAGC
CAAAGTAGAC ATCCAGCTAG TGTCGTGCCG GACAAGGAAT TCATCACCCA CATCACCTAC
AACACAGAAG GCCAGCCAAC CGAGGTCACC GAATCGGGGT TTAGTCCGAT TGACGCCAAG
GGCCGTCCTC AGCCAACGGC GCTGACCCGC ACCACGACCT ATACCTACCA AACCATCAAG
GGTCATAGCC TGCTCACACA GATCGACGGC CCCTTGCCCG ATGGTCCGAC CCAATCCCCC
GTAGATTCGG ATATTACGCA GTTTGAATGG GATAGGGGCG GTTCCCATGT CGTAAAACTC
ACCAGTCCGC TCCAATTGGT TGCACGCTAT ACCTACGACG CCGCGGGTCG TATAAGCGCC
GTGACTGATC CGGACGGGAT AACGATGCAC ATCGACGACA ACTATTTCGG CCGCCCCGAA
AAAGTGCTTC GTCAAGTCGC GGGCGGAGGG CAAGGTTGGT CGTTCCAATA CGACGCTCAA
AATCGTTTGA TTCAAGTGTC CAGAGTGGAC GGCAGCCAAG AGCGGCCGCA GGATCGGATG
GCGTACGACA GTGCAGGGCG TCTACTGTGG CAGGCAACGG CTCTCGGAAC GCTCAAACAG
GCCAGCTACG ACACGGAAGG CCATGTGTTG AGTGGCAGCG TTCGCACAGC GGGTCATGAA
CAATCCGAGC GCTATGGTTA CGACGACAGG GGACGGCTGA TCTTCGTAAG CGACGGTACC
GGCAGTACTT ATCGCCTTCA GTACACGAAA AATGGACAGC TTCAATCCGT CATCAACCCG
CTCGGACAGA TCACCCGGCT GGCATTCGAT GTCGCGTTAC ACCCCGTCTC AGTTACCACC
GCGGCAGATA CGCGCTTGGC GCGCACCGTG TCCGTCAGCC GGAATCATGC AGAACAATCC
CTTACGGTGA TGCCTGCATT GAAAGATCAA CAGGCGCCCA CCGTCACTAC GCGCACATTA
AAAGATGATT TTGGCCGAAT CGTCGCCATA ACGAGCCCGA ACAGCGGCGA AACTACTTAC
CGCTATGATG ACGATAATCG CCTGATCCGG AAAACCAATG CGCTGGGGCA GGCTCGGCAT
TACCAATACG ATGTTGCCGG TCGCCTGATT CGTCAGTACA CCACACAAGG GACTGGTCAC
GCTGTTCCCG AGTCGACAAC GACCTACCGT TACACCGGCA CCCGGCTGGT TGAAACCATT
GATCCGGCAC AGACCACCCG ATATGGCTAC AACCAATGGG GGCAATTGAC GGCAAAAACG
GTTGTTCTGC ATTCGCATCA AGGCACCGAG ATCACGGCCA CGACAAACTA CGCTTATGAC
CGGCAGGGGC GCCTGGCGAC AAAAACACTC CCCGACGGTA GTCTGCTTCG CTACCTTCGG
GATGGTCAGG GACAGATTGT GTCCATGCAA TGGCGCGATG GACTATCTGG CCCCACACGA
ACGCTTGTTT CGCACCTGAA ACGCGATCTG GGTGGGTTGG CTGCACTCAC CTATGGCAAC
GGCATTCAAG CCAAATGGCA ACGCAGCAAG GCGGGTGTTC TGGCGAGGAT TGTCTACAGC
TTGCCTGACG AACCGGGGCA AACCAGTCAA ACGGCCAGTA GCGATTCCAG GCGAGTGGCG
TGGGATCACT GGTTGGGTTG GCTCGTGAGC CCGGTCAAAG CGGACGAACC ACCGGCAAGC
AGCCAAACGA ACAGCGCCTG GCCCGGCGCC TATGGCATTC CGGTTGAGCC AAACACCCTC
TGGGATGCGC GATATCTCTA TGACGATCTC GGTAATATTC TGGCTGTTCA ACATCAGGGC
CGTCTGGTTG GCGATGTAAC CCAATCCCGT TACCACTATG ATATGCATAA TGAATTGATT
GAAGCTCAAT ACGGCCACGG TTCCGTTCTT GTCCGCTCCG GTGGTTCATC ACACCGTAAG
AAATGGGTTG CTCAAGCGCC CAAAGACGCC AGAAGTTGGC GCTACCTGCT CGACGGCAAT
GCCAATCGCC TGTACGTGCA GCAAGACAGC ACGGCAAGCC AACCGGCAAC AACCCAAACC
ATTCGCTATC AGCCAAACAG CCAGCGTCTA GCGGGTGCTG GCTACGATGC CAACGGGCAA
ATCCAAGCTA TCGATTCGCT GCAAATCCGC TGGAACGCAG AAGGTCGGCT GCAAAGCCTC
TGGAATGGAG CGCATGAAAT TGCCCGATAT CGTTATAACG CCACGGGCGA ACGAGTGGCC
AAAATTGTTG ATTCCCGTTC CGGCCACAGC AAAGAAACGC TGTACCTCTA CGACCAGCAA
CGTCACCGTC AGGCAAAACT GGATGCCGCC GGGCATATCC TGCGCCAGTA CTTCTGGCTG
GGTGACAAAC TGGTCGCCGT AGTCGACTAC CCGGAGGGTA GAAAACCATT GGGTAATCAA
GAGCCCGATA CATTCAATAA GCTCAACCAG TACATCGGCT ATCTCTGGGG CGGCAGTCTT
GTTCACACCG GTTCAGGCCG CATCAGCTAT TTGCTCGACA ACCACCTAGG CGCCCCGATC
GCCGCCACCG ATGCCCAGGC GCAGGTCATC TGGCGTGCGC ACTATGGCCC CTATGGTCAG
CAACTTGATG TTGCGGATAG CTTGGTCAAA GATCATTTCA GCTTATCCCT GCGCAACCCG
GGGCAATGGC AGGATAAGGA AAGCGGCCTC TATTACAACG ACCACCGCTA CTACGACCCG
GCAACGGGGC GCTACCTCAG CCCCGATCCC CTGGGGTTGG CCGGCGGCTT GAATGCCTAC
GCCTATGTGG CCGCCAATCC CATCGCATAT ACCGATCCTT ATGGATTGAT GCTGTTTGCC
TTCGATGGCA CCAACAATGG CGCCCCGGGT CATCTGGTTC CCGGTAATGA CACGAGTAAC
GTCTACCGTT TTTATGATGC GTATCAGTTC AGTAGTGCTG ATCCTAGGTA TTACATAACC
GGCATCGGCA CCACCTATCC CGAGAAACAT CAGAACTATC GGGGCAATCC GAGAAGTGGA
GACGGGTTCA CTGAGCGACT TAGTTACGCT ACTGCCGACT TAAACACATT TATAGCTAGG
CACAACCCAA CCGATACGCT CAATATCGAT GTGGTCGGTT TCAGCCGGGG GGCGGCCGAA
GCGCGTGCTT GGGTCAATCA GATCGTCGCC CAAACCAACA ATGGCTTATA CAGTTTCACT
CAAGAGGGCG AGAATTACAG CGCCTGCCTG AACTTCCGTT TTGAAGGCTT GTTCGAAACC
GTGCCGCACC TGGGGTGGAC AGGCGGTGAT AATGCGTCGC TCAACCTATC CATTCCCGAT
CAGGTACAGT ATGCCGTTCA GGCCCTGGCC CTGAATGAAA ACCGCGGCGG CCCGACGAAC
TTCAACGCCT ATTCCATTAT GCCCACCCCG ACGACACCCA ACAGCACGAC ACCCGGTGCC
ACCCGCATCG AACAAGGGTT TATCGGTAGC CATTCGGATA TTGGCGGCGG CTATGGCATC
CCGGGGACTA CAAACGACAA GCCTGAGGGC GATCTTTCCA ATGTCGCGTA TACCTGGATG
TACAACCAGG CCAAGGCGGC AGGGGTGACG GAGTTGAAAC CAAACACGCA TACTCAAGTG
AATAGTCCCA TCCTGCACGA TGAAGTCACC GCACATATCT ACTACTTCGG CGGTCGAACC
ATACAGTTCG GTGACGGCAG TGTGGTTCCT GAAACCAGTG CCCGGATCAA CAGCACGGGC
AACCCGGACA AGGTGACTCA GGACTGGACC TCGTCCTACA TCACCCTGAA CCACCGGTAC
AGAACGGTGC ACCCTCCTCA TGGTGGTGCC CCGTATACCC AGACCTTGCC GCCATGCCCT
GAAGATGCAT CGATCATCGG CATGGTCGAT ATGACGACCT ATGGCGCCTG GCTCAAGAGT
ATTGGCGTCG ATATCACCTC CAGCAATCCC TCACCCACCC AACAGATGTG CCAATAA
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| Protein sequence | MINKSCTNQT QTGVKPQVQS QSRHPASVVP DKEFITHITY NTEGQPTEVT ESGFSPIDAK
GRPQPTALTR TTTYTYQTIK GHSLLTQIDG PLPDGPTQSP VDSDITQFEW DRGGSHVVKL
TSPLQLVARY TYDAAGRISA VTDPDGITMH IDDNYFGRPE KVLRQVAGGG QGWSFQYDAQ
NRLIQVSRVD GSQERPQDRM AYDSAGRLLW QATALGTLKQ ASYDTEGHVL SGSVRTAGHE
QSERYGYDDR GRLIFVSDGT GSTYRLQYTK NGQLQSVINP LGQITRLAFD VALHPVSVTT
AADTRLARTV SVSRNHAEQS LTVMPALKDQ QAPTVTTRTL KDDFGRIVAI TSPNSGETTY
RYDDDNRLIR KTNALGQARH YQYDVAGRLI RQYTTQGTGH AVPESTTTYR YTGTRLVETI
DPAQTTRYGY NQWGQLTAKT VVLHSHQGTE ITATTNYAYD RQGRLATKTL PDGSLLRYLR
DGQGQIVSMQ WRDGLSGPTR TLVSHLKRDL GGLAALTYGN GIQAKWQRSK AGVLARIVYS
LPDEPGQTSQ TASSDSRRVA WDHWLGWLVS PVKADEPPAS SQTNSAWPGA YGIPVEPNTL
WDARYLYDDL GNILAVQHQG RLVGDVTQSR YHYDMHNELI EAQYGHGSVL VRSGGSSHRK
KWVAQAPKDA RSWRYLLDGN ANRLYVQQDS TASQPATTQT IRYQPNSQRL AGAGYDANGQ
IQAIDSLQIR WNAEGRLQSL WNGAHEIARY RYNATGERVA KIVDSRSGHS KETLYLYDQQ
RHRQAKLDAA GHILRQYFWL GDKLVAVVDY PEGRKPLGNQ EPDTFNKLNQ YIGYLWGGSL
VHTGSGRISY LLDNHLGAPI AATDAQAQVI WRAHYGPYGQ QLDVADSLVK DHFSLSLRNP
GQWQDKESGL YYNDHRYYDP ATGRYLSPDP LGLAGGLNAY AYVAANPIAY TDPYGLMLFA
FDGTNNGAPG HLVPGNDTSN VYRFYDAYQF SSADPRYYIT GIGTTYPEKH QNYRGNPRSG
DGFTERLSYA TADLNTFIAR HNPTDTLNID VVGFSRGAAE ARAWVNQIVA QTNNGLYSFT
QEGENYSACL NFRFEGLFET VPHLGWTGGD NASLNLSIPD QVQYAVQALA LNENRGGPTN
FNAYSIMPTP TTPNSTTPGA TRIEQGFIGS HSDIGGGYGI PGTTNDKPEG DLSNVAYTWM
YNQAKAAGVT ELKPNTHTQV NSPILHDEVT AHIYYFGGRT IQFGDGSVVP ETSARINSTG
NPDKVTQDWT SSYITLNHRY RTVHPPHGGA PYTQTLPPCP EDASIIGMVD MTTYGAWLKS
IGVDITSSNP SPTQQMCQ
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