| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_2279 |
|---|
| Symbol | |
|---|
| ID | 8535443 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | + |
|---|
| Start bp | 2447139 |
|---|
| End bp | 2448260 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 646384658 |
|---|
| Product | 3-dehydroquinate synthase |
|---|
| Protein accession | YP_003264140 |
|---|
| Protein GI | 261856857 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0337] 3-dehydroquinate synthetase |
|---|
| TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGATA CTGCAGCTGA GATAACGAAC ACCGCTTCCC TCGTTGTTGA TCTGGCTGAT
CGCAGTTATC CGATTTATAT CGGGGTCGAT TTGCTCAAGC AGCCCGAGCT GTTGGCCCGA
CACATCCCGG GTGACACGGC GGTTGTTGTC TCGAACACCA CCGTAGCCCC GCTTTATGCC
GATGCGCTGA TCAACGGGCT GAGCGAATTC AAGAAAGTCG AACAGATCGT GCTGCCGGAT
GGTGAACAGT ACAAATCGCT GGAAGTACTC AGCACGATTT TCGATGCGCT GGTGGATGCA
CGCTGCGACC GCCAGACCAC ATTGATTGCA CTGGGCGGCG GGGTTATCGG CGATATCACC
GGCTTTGCCG CCGCCAGCTA CCAGCGCGGC GTCCCCTTCA TTCAGATTCC GACGACACTG
CTCTCGCAGG TCGATAGCTC CGTTGGTGGA AAAACGGGGG TCAATCACCC TCGTGCCAAG
AACATGATCG GCGCGTTTTA CCAGCCCCGC TGCGTCATTG CGGACATTCG CACGCTCGAC
ACCCTCCCAG ATCGAGAGTT GTCGGCTGGG CTCGCTGAAA TCATCAAGTA CGGTCTGCTC
TGGGATGTGG ATTTCCTCGA CTGGATCGAA ACCAATATCG CCAGGCTGCG CGCACGCGAC
GAAGCCGCTT TGAAACACGC AATCACACGG TCTTGCGCCA TCAAGGCCGA TATCGTCAAT
CAGGACGAAC GCGAGGGGGG GCTACGCGCG CTGCTCAATC TGGGGCACAC CTTCGGCCAC
GCCATCGAAG CGGGCATGGG CTACGGCAAC TGGCTGCATG GTGAAGCCGT GGGTGCGGGC
ATGTGCATGG CAGCGGATCT TTCGCATCGC CTCGAATGGA TCAGCGCTGC TGATCTGGCC
CGCGTTTATC GCATTGTGGC CGCCGCAGGT TTGCCGACAC AAAGCCCGAG CGAGCTCAGT
ATCGAAACGA TCCGCAGCCT TATGGACAGT GACAAGAAAG TGCAGAGTGG TCGGCTTCGT
CTGGTCCTGA TGCACGGCCT CGGCTCGGCG CTCGTCACCG ACAAGGCTCC GGAAGAAACC
CTGATGCAAA CGCTACAAAA CACTCACGCA TCGGCCTTTT AA
|
|---|
| Protein sequence | MPDTAAEITN TASLVVDLAD RSYPIYIGVD LLKQPELLAR HIPGDTAVVV SNTTVAPLYA
DALINGLSEF KKVEQIVLPD GEQYKSLEVL STIFDALVDA RCDRQTTLIA LGGGVIGDIT
GFAAASYQRG VPFIQIPTTL LSQVDSSVGG KTGVNHPRAK NMIGAFYQPR CVIADIRTLD
TLPDRELSAG LAEIIKYGLL WDVDFLDWIE TNIARLRARD EAALKHAITR SCAIKADIVN
QDEREGGLRA LLNLGHTFGH AIEAGMGYGN WLHGEAVGAG MCMAADLSHR LEWISAADLA
RVYRIVAAAG LPTQSPSELS IETIRSLMDS DKKVQSGRLR LVLMHGLGSA LVTDKAPEET
LMQTLQNTHA SAF
|
|---|
| |