| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_2222 |
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| Symbol | |
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| ID | 8535386 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 2392769 |
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| End bp | 2395312 |
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| Gene Length | 2544 bp |
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| Protein Length | 847 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 646384602 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_003264084 |
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| Protein GI | 261856801 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.162543 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCAAG CGCCCATCAT TCCGTTCATC TCGCTCAAAA GTAAATGGCC TGTATTTTGG
CCCTTATTCT GGCTGGTGGT CGCGTATGTC ATAGGTGGCA AGTTGAGCAC GCTGCTTGCC
ATCAATCCGG GTTATGCAGC ACCTTTATTC TTACCGGCGG GTATCGCCAT TGCTGCCGTG
TTTCTCGGTG GCATACGCTT CTTGCCTGGG GTATTTATCG GTGCTGCGAT CCTGAATGTC
TGGATCGGTC TGGATGCATC GAATCCGGTG TATTGGCAGG TGGCGGTAAG CGCGTTTCTG
ATTGCGCTCG CCTCGACACT ACAAGCCGGT GTCGGTGGGC TGGTTTTTCG CAGGCTCGCG
GAGCGCAGCG ACTTAACACA GGGAGCCTCA CGATCATTCC TTCTAACCGT TTTGCAGCTG
ACGCCGCTGA TTTGCCTTAT CGGTTCGAGC GTGGCGGTGT CTGGCCTGTG GGCCATCGGC
TCGATTGAGT CGACTTCGGT TCAAACCAAC GGCTTCTACT GGTGGACGGG CGATATGCTC
GGTGTGGTGG TGATGTTTCC GCTGGTGTTG ACCACCCTCT CGGGCCCGCG CAAGCAATGG
TCCAAGCGCG CATTCACCAT CACCCTGCCG GTCTTGCTGG TGTTGGTCAG TGGTCTGGTG
GGGCTGTATT TTATGCAGAA TGCGGCCCTG AACAATGCGC AGTTAAGGCT TGCGGACGAG
TTCGGCAAAC AAAGCCAGAA GATCCGGCTG CGGATTGAAC AGCGGTTGAA CGCGTATGAG
CAGGTGCTGC GCGGTTTGCG CGGGCTCGAA GCGGCTTCCA ATTCACTGAC CCGCCAGCAG
TTCAATGCCT ATGTGTCCGC GCTGGATCTT GGCCAGCACT ATCCGGGTTT CCTGGCGGTG
GGCTTCGCGC CTTGGGTCAG CCAGAGCAAA GCCGCCGGCC TAACGCAATC GATCCGCCAG
AGCGGTTTTC CTACCTTCGA AATCCTTCCA CCCGGCAGCC GTGCCCAATA CGCACCCATC
GTGTACCTTG AACCGTTTTC AGGTCGAAAT CTGCGGGCCT TTGGCTATGA CCTGTATACC
GAACCCGTTC GGCGTGCAGC AATGGATCAG GCCCGTGATC TCAATCAGGT CGTCATGTCG
GGCAAAGTTC GACTGGTGCA GGAAAATGGC CAGCAAGAGC AGTCCGGCGT TCTGCTGTTC
TTGCCGGAAT ACCGCCACGG CAAGGTGCCG CAAACCATTA ATGAGCGCCG TCTTCAGCTC
GCCGGCTGGG TTTATGCGGC CTTTCGTATG AACGATCTGA TGAACGGTTT GCTCGGCGAT
CAACAAGACG ATTTCGGCCT TGCGATTTTT GATGGTACCA CCCCGGCCGC CGAAAACCTT
TTGTATCAGA GCGATACGGC CAAGCCCGCG GTAAACCAGG CCGCATTCGA CTACACCCGA
ACGGTGGATA TCGCCCATCG GAGCTGGACG ATTCAAATTG TTTCGCTACC CGCCTTCGAT
CAACAGCTCA ACACTCAAAC AGTCGATCTG ATTCGGTTTG GTGGGCTGGG CACCACCCTG
CTGCTGGCGC TGATGGTCTG GCAATTGGCC AGCGGGCGCG AGCGAGCGGT CAAAATCGCA
CACAATATGA CCCGCGAAAT GAAGCAAAAA CAACAGCAGT TGGTCGAAGC GCAACGAATC
GCGCACATCG GTAGCTGGGA ACGTGACCTG CGCACTGGGA CGTTGGTCTG GTCGGACGAG
CTGTACCGAA TTCTGGCGCT TGATCCGCAA GCGGCGGGTT CCGTTCATAC CCAATTGCTG
CGCTGGGTGC ACCCCGATGA CCGCCGCATG GTGGCAGAAG CCTGCCAGCA GCTTGAGCAG
GACGGCACGC CCTTTTTTCT CGAACACCGG CTGCTGCTTC CGGGCGACGT GATCAAATAT
GTGCGCCAAT CCGGCGAGCA ATTCACTGAT GATGAAGGGG TTGCCTTAAA GATCATCGGC
ACGCTTCAGG ACATCACCAC TCAAAAACAG GCACAGGCCG CAGTCGAGCA GATGGCGCAC
TATGATGCCT TGACCCAACT ACCCAACCGG GCGCTGTTTT TCGATCGCCT GCGCATGGTC
TTGACCCAAT CGAAGCGGAA CAAAAGGCCA CTGGCACTAT TTTATATGGA TCTCGATGGC
TTCAAGCACG TGAATGATTC GCTCGGGCAT CAAGCCGGTG ATCTCCTCTT GATCGCCGTG
GCGGACCGGC TCAGGCAAAT CGTTCGGGCC TCCGATACGG TCGCGCGGCT CGGTGGGGAC
GAGTTCACGG TGATTCTGCC CGACCTGCGA CAGCCAGAAG ACGCGATCAA GGTCGCCGAA
AACATCATTC AGTCGATTGA ACAACCCTTC ATGATTGAGG GGCGTATCGT GGAGATCGGC
ATCAGTATCG GCATCACGCA TTGCGTTGAA AATCGCTTTA AGGAAGACGA ACTGGTTCAA
CTGGCCGATC AAGCCATGTA CGAGGCCAAA CAGGCGGGGA AAAACACCTA TCGTGTCCGG
ATTGGAGCGA ATCGCCCCCA TTGA
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| Protein sequence | MNQAPIIPFI SLKSKWPVFW PLFWLVVAYV IGGKLSTLLA INPGYAAPLF LPAGIAIAAV
FLGGIRFLPG VFIGAAILNV WIGLDASNPV YWQVAVSAFL IALASTLQAG VGGLVFRRLA
ERSDLTQGAS RSFLLTVLQL TPLICLIGSS VAVSGLWAIG SIESTSVQTN GFYWWTGDML
GVVVMFPLVL TTLSGPRKQW SKRAFTITLP VLLVLVSGLV GLYFMQNAAL NNAQLRLADE
FGKQSQKIRL RIEQRLNAYE QVLRGLRGLE AASNSLTRQQ FNAYVSALDL GQHYPGFLAV
GFAPWVSQSK AAGLTQSIRQ SGFPTFEILP PGSRAQYAPI VYLEPFSGRN LRAFGYDLYT
EPVRRAAMDQ ARDLNQVVMS GKVRLVQENG QQEQSGVLLF LPEYRHGKVP QTINERRLQL
AGWVYAAFRM NDLMNGLLGD QQDDFGLAIF DGTTPAAENL LYQSDTAKPA VNQAAFDYTR
TVDIAHRSWT IQIVSLPAFD QQLNTQTVDL IRFGGLGTTL LLALMVWQLA SGRERAVKIA
HNMTREMKQK QQQLVEAQRI AHIGSWERDL RTGTLVWSDE LYRILALDPQ AAGSVHTQLL
RWVHPDDRRM VAEACQQLEQ DGTPFFLEHR LLLPGDVIKY VRQSGEQFTD DEGVALKIIG
TLQDITTQKQ AQAAVEQMAH YDALTQLPNR ALFFDRLRMV LTQSKRNKRP LALFYMDLDG
FKHVNDSLGH QAGDLLLIAV ADRLRQIVRA SDTVARLGGD EFTVILPDLR QPEDAIKVAE
NIIQSIEQPF MIEGRIVEIG ISIGITHCVE NRFKEDELVQ LADQAMYEAK QAGKNTYRVR
IGANRPH
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