Gene Hneap_2194 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHneap_2194 
Symbol 
ID8535358 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothiobacillus neapolitanus c2 
KingdomBacteria 
Replicon accessionNC_013422 
Strand+ 
Start bp2358576 
End bp2359679 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content60% 
IMG OID646384575 
Product1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 
Protein accessionYP_003264057 
Protein GI261856774 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCACG TCCCCTCGCC CACGATTCGC CGACTGTCCC GCAAGATATT CGTCGGCAAT 
GTGCCGATTG GTGGTGATGC GCCTGTGGCC GTGCAAAGCA TGACCAATAC CGAAACCTGT 
GATGTGGCGG CCACGGTGGC GCAAATTCAG GCGTTGCAGA AAGCCGGAGC CGATCTGGTG 
CGCGTATCTG TGCCCACCAT GGAGGCCGCC GAAGCCTTTG GAGCAATCCG CAAGCAGGTC 
AGCCTTCCGC TCGTTACCGA CATCCATTTC GATTACCGTA TCGCATTGCG CGTGGCCGAT 
CTCGGTGCCG ATTGCCTGCG AATCAATCCC GGCAACATCG GTCGGGAAGA TCGCGTGCGT 
GCCGTGATCG ATTGCGCGCG CGACAAAGGC ATTCCACTGC GCATCGGTGT CAACGCCGGC 
TCGCTGGAAA AAGACCTGCA ACAGAAATAC GGCGAGCCCA CCCCGGAAGC GATGGTCGAG 
TCGGCCATGC GCCATATCGA TATTCTTGAT CGACTCGATT ACCCCGATTT CAAGGTATCG 
CTCAAGGCAT CGGACGTCTG GATGACCGTG CTCGCGTACC GTCAACTGGC CGGGCAGATC 
GAACAACCGC TGCATTTGGG TATTACCGAA GCGGGTGGAT TGCGTTCCGG AGCCGTCAAA 
TCGGCCGTCG GGCTGGGCAT GTTGCTGGCC GAGGGCATTG GTGACACGAT CCGCATCTCG 
CTGGCCGCCG ACCCGGTCGA AGAAGTCAAG GTGGGTTGGG ATATTCTCAA ATCCCTGCGC 
CTGCGCAACC GCGGTATCAA CCTCATCGCC TGCCCTTCCT GCTCACGGCA GGAATTCGAT 
GTCATCAAGG CCGTCAATGC GCTCGAAGGG CGGATTGAAG ACATCGACAC CGCGATGGAT 
GTTGCCGTGA TCGGCTGCGT GGTCAACGGG CCGGGCGAAG CACGCGAAGC GGCCATTGGC 
TTGACCGGCG GGCAACCCAA TCTGTTGTAC ATCAACGGCA AACCGGCAGG GAAACTGACC 
GAAGCCGAAC TGGTCGATGG TGTAGAGCGC GCAATTCGTG AACGGATCGC CGCCAACAAA 
GCCACGGAAT CCAGCCCTAC CTAA
 
Protein sequence
MSHVPSPTIR RLSRKIFVGN VPIGGDAPVA VQSMTNTETC DVAATVAQIQ ALQKAGADLV 
RVSVPTMEAA EAFGAIRKQV SLPLVTDIHF DYRIALRVAD LGADCLRINP GNIGREDRVR 
AVIDCARDKG IPLRIGVNAG SLEKDLQQKY GEPTPEAMVE SAMRHIDILD RLDYPDFKVS 
LKASDVWMTV LAYRQLAGQI EQPLHLGITE AGGLRSGAVK SAVGLGMLLA EGIGDTIRIS 
LAADPVEEVK VGWDILKSLR LRNRGINLIA CPSCSRQEFD VIKAVNALEG RIEDIDTAMD 
VAVIGCVVNG PGEAREAAIG LTGGQPNLLY INGKPAGKLT EAELVDGVER AIRERIAANK 
ATESSPT