Gene Hneap_2184 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHneap_2184 
Symbol 
ID8535348 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothiobacillus neapolitanus c2 
KingdomBacteria 
Replicon accessionNC_013422 
Strand
Start bp2348588 
End bp2350450 
Gene Length1863 bp 
Protein Length620 aa 
Translation table11 
GC content58% 
IMG OID646384565 
Productprotein-export membrane protein SecD 
Protein accessionYP_003264047 
Protein GI261856764 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCGTT ATCCGTGGTG GAAAAACCTG CTGATTATCC TGGTGCTTTT GCTGGGCATT 
TTCTTCGCAT TACCCAATAT ATACGGTGAG AATCCGGCAC TGCAAATTTC CAAGCGCAAT
GCCGTCATGG ATCAGGCCGC CGTTGATAAG GCAGTGGCCG CACTCAAGGC CGCCAACATC
CCCGTCAAAA GCGCCCGCCT CGAAGACAAG GACGGCTTGA TCCAGTTCAC CTCCACAGAT
GCGCAGCTCA AAGCGGTCAA TGTCGTGCGC GAAGCACTGG GTGAAAATTA TCCGGTAGCA
CTAAACCTCG CCCCAGCAGC ACCACGCTGG ATGCAGAACC TAGGCGCCAA GCCAATGTAT
TTGGGGCTCG ATTTGCGCGG TGGTGTGCAC TTTTTGATGC AAATTGACAT GCAGGCCGCC
ATCAAGACCG CGCTGGAGCG GCGGGTTGAT GGCATGCGCG GCGACCTGCG TCAGGCAAAC
ATCCGCTATG TGGCCGCCGA TGTTGAAAAT GGCGACGAAA TCGCCCTGCG ATTCCCGGAC
GCCGCGGCCC GCGATGCCGC ACTCAAATCC ATGGCTGGCA ACTACCCCGA GCTGAAATTC
AGTACCGATG AACGCAACGG TCAGCCTTTC CTTACAGCCA AATTCACGGA TGTCGGCGCC
ACCGCCGAGC GCAAGGCAGC CGTGGACCAG AACATCACCA CTCTGCGCAA TCGCGTCAAC
GAACTGGGGG TCGCCGAACC GCTGATTCAG CAGCAGGGCG ATGACCGAAT CGTGGTCGAA
CTGCCCGGCA TTCAGGACAC GGTTCGCGCC AAGGAGATCA TTGGTGCTAC CGCGACACTG
GAATTCCGAC TTGTCTCCGG TACACCGACT GATTGGGTCG ATGCCGAGCA GAGTGGCCGC
GTGCCGCCGG ATGCGCGGCT CTATCACGAA AAAGATGGCC GACCAGTTCT GCTCAAGCGC
CAGGTCATCG TGACCGGCGA CCGCATTACG GGCGCTTCAT CCGGCTTCGA CCAACGCTCG
GGCTCACCGG CCGTATTCGT GAATCTGGAT GGCCAAGGTG CGCGCCGAAT GGCCGATATT
ACCGGTCAGA ACATCGGCAA GCAGATGGGC GTGGTGTTCA TCGAGCATCG TACCGAAACG
AAGATAGTTG ATGGCAAGCC AGTCAAAGAC AAAAAGGTCA TTCAGCAGGT GATCAACGTC
GCCACCATTC AGGATCAGCT CGCCAATCGT TTCCAGATTA CGGGCCTCGA CTCGCCAGAA
GAAGCGCGCG ACCTAGCTCT GCTGTTGCGG GCCGGTGCGC TGCGTGCGCC GATGGATATC
GTGGAAGAAC GCACCGTAGG CCCAAGCTTG GGTGCGCAAA ACATCCAGTC GGGCGTCAAT
GCGTCGATTT TGGGCTTCGC ACTGGTCGCC GTATTCATGC TGATTTACTA CCGCGTGTTC
GGCGTGACTG CAATCGTTGC CTTGGGTGTC AACCTGATCC TGATCGTCGC CGTGCTCTCG
ATGTTGCAGG CCACGCTGAC CTTGCCCGGT ATTGCGGGGA TGGTGCTGAC GCTGGGTATC
GCGGTGGATG CCAACGTGCT GATCAACGAG CGCATTCGTG AAGAACTGCG CAACGGCCTA
ACGCCCCATG CCGCCATCAA GGCGGGGTAT GAGCGCGCCT TCGCCACCAT TATCGATTCG
CACGTAACTA CCCTGCTCGC CGCCATCGTG CTGTTTGCGC TGGGAGCGGG CGCGGTGAAG
GGATTTGCCG TCACGTTGAC AATCGGGATT CTGGCCTCGC TCTTTACCGC AATCATGGTC
ACGCGTGCAC TGGTGAACCT GATTTACGGT CGCCGCGTAC GTCTGAACAA GATATCTATT
TAA
 
Protein sequence
MNRYPWWKNL LIILVLLLGI FFALPNIYGE NPALQISKRN AVMDQAAVDK AVAALKAANI 
PVKSARLEDK DGLIQFTSTD AQLKAVNVVR EALGENYPVA LNLAPAAPRW MQNLGAKPMY
LGLDLRGGVH FLMQIDMQAA IKTALERRVD GMRGDLRQAN IRYVAADVEN GDEIALRFPD
AAARDAALKS MAGNYPELKF STDERNGQPF LTAKFTDVGA TAERKAAVDQ NITTLRNRVN
ELGVAEPLIQ QQGDDRIVVE LPGIQDTVRA KEIIGATATL EFRLVSGTPT DWVDAEQSGR
VPPDARLYHE KDGRPVLLKR QVIVTGDRIT GASSGFDQRS GSPAVFVNLD GQGARRMADI
TGQNIGKQMG VVFIEHRTET KIVDGKPVKD KKVIQQVINV ATIQDQLANR FQITGLDSPE
EARDLALLLR AGALRAPMDI VEERTVGPSL GAQNIQSGVN ASILGFALVA VFMLIYYRVF
GVTAIVALGV NLILIVAVLS MLQATLTLPG IAGMVLTLGI AVDANVLINE RIREELRNGL
TPHAAIKAGY ERAFATIIDS HVTTLLAAIV LFALGAGAVK GFAVTLTIGI LASLFTAIMV
TRALVNLIYG RRVRLNKISI