| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_2172 |
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| Symbol | |
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| ID | 8535336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 2332383 |
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| End bp | 2335010 |
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| Gene Length | 2628 bp |
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| Protein Length | 875 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 646384553 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_003264035 |
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| Protein GI | 261856752 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGGCGAT GGTTACGTTC GATTCGGCTA CTGATCGTGG GCGCCGCCCT AGCGGTTTCC
GTTCTGGTTG CCGTCGCCAT GTATTGGGCC ACCACCGGTG TTTTCGAACG CACGGTGCGT
CAATCTGCCG TTGATATGTC AGCCTCGCTG GCCGACGGCA CCTTCAATGC AATGTATCAG
ATCATGCGGC AGGGATGGTC CCGGGCGCAA CTCGACGAAT TTCTGAAAAC GATCCGTGCC
CAAAGCAATG ATTCCAGTGC CCGCATCGAG TTATACCGCG GCAGCAAGGT GATTGCGCTC
TTTGGACAGA TTGAACAGCC TGATCCAGAC GCCCTGGTGC TATCTGCTTT TGCCACAGGC
AAAACCCAGA CACAAATGCA CAATGGGATG ATTCGGTATG ACCGCCCCCT GATCGCCGAA
GCGCAGTGCC TGAGATGCCA TACCAACGCC AAGGTGGGCA ATGTGCTGGG TGTGCTCTCG
ATCGCGCAAT CTGTTGGTCA GATCACGACA AAGGCACACA ATGAGCTTGT CAGCAAGCTG
CTGATTATCA TGCCGATTCC CCTGCTGGCT GCGCTGATGA TTGCGCTATT GCTGGGGCGG
CGGATGGGGC GCTCGATTGC CCGACTGAAG AATTCGATCA GTTATCTCGA CCGGGTGGAA
GATTTGGCGC ACATCCGCTT CAGCGATGCG CACACTGGGT TTTCGGAACT CGATGATGTG
CTGATCGAAG TCGATGGCTT AACGGACAAA ATACGGCATC TAGCAGTTGA TCGGAATTTG
CTGGAATTTG AAATCCACCT GCTCGAACGG TTTGTCATCA CCTCGGATGT GGTGCGGGAC
TGGCGCCGCT ACGTGCGCGA TCTTCTTAAA GAAATCAACA CGGTTCAGAC GGTTCATGGC
GTTTTTACCG CTTTTGCGGT TGGCGACCGA CCCGCCAATG TTGAGCTATT CTGGTTCGAC
ACCATCAACG AGACGGTCGC TGCAAGCATG AGCCAGCGGG TTAAGTTAAT TGTGGGGGAA
ACCCTGGGGC AGGTTGCTAC CGACTTTATC CCCCGCCAGC ACAGTCTGGA CCCATCCGGC
AGGCCCACTC TCGAAAACGC GCGGCAGCTG GATCTGCGCA CCAAAGAGAT CACCATGGAC
AACCCGTCCA TTCACGGCTT GGTCGGTCTT ATTCTGCCCA ACACCCAAAA CCAGTCTCAG
GTCGAGCGCC TCTTGGTCGA GTCGATTCTT TCCACCATGC TCAACGTGGT GGGCTCGGTG
CGCGCCATTG AAAAGCATAC CGAGGATCTG GAGTTTTACG CCACGCGCGA TCCGCTGACA
CAGATGTATA ACCAGCGCAT GTTCTGGTCG CTACTGGATT ATGAAATGGA TCGCGCGCAG
CGGCACGGCT ACTCGTTTGG CTTGTTTGTC ATTGATATCG ACGATTTCAA AGTCGTCAAC
GACAGCTACG GTCACACCTT CGGTGACACT TTCCTGTGCA AGGTATCCGA GTGCCTGCAC
GATGCCTTGC GCACCGGGGA CATCCTCGCG CGCTATGGTG GCGATGAGTT CACGGCCATT
CTCCCAGAGG CAGGAGAGAA GGAATGCATC ATGGTGGCCG ACCGGCTGCT GGCCCGAATA
CGAAATTTGT CGATGAAAAC ACCGGATGGA CATTCGGTCG GGGTTTCATT GTCTATCGGT
ATCGGCATCG GCCCGACACA CACCGACTCG GCCCGCGGCC TGTTCTCCAT CGCGGACGCA
CAGATGTATC GGGCCAAACT CGCGGGCAAG AATCAATTCG CGCTTCCCAA TCCCGATGAG
CCATTGGCCG ATCTGCACGA CAAGCCCATC GAGGATCAGG ATATTCTCGA AGCGCTCACC
GAAGAACAGC CACCACGCAT TTTATTCCAA CCCATTTTCG CCATTGGGGA TGCCTCGGTC
GAACCGCTGG AAAACCTGCT ACTCGAACGG GTTGGCATGG AAGTACTGGC ACAGCTGAAT
ATCGGCGATC GTTGGGTCAT GGCGCGTGAT TTTCTCGGCA TGGTCGAGCG GCGCGGGCAA
GCCGAAAACT TTGATCGCCA ACTGATGAAA GCGCTCATTT GCACGCAAGT CGCTACACAT
TGCAACGGCC TGATCTTCGT CAACATTTCA CCCCGAACCG TACGTGCGAA ATCATTCCTT
GCGGACATCG CGCATCTTAT GGATACCGTC GGCATGGCGC GCAGTCGGCT CGTGTTCGAG
CTGAACGAGC GCGAATCGCT GGCCGACCTA AACCTGTTCG ATCGTTTCAT CGAGGAACTG
CACGGTTTTG ACTTCAAATT CGCGATTGAT CAAACGACCC CGGGGCACTG GATTTTCCAA
CACCTGCGTC GTCATACCGT TGATTATGTG AAGATTAATG TCGACTGGCT CACCAATCGC
AGCCAGATCG CCAGGGATCG CGCGTTTATC GACTGCCTGC TGGGTTTGGC GCGGGCGTTG
TCCGTCACGA TCATTGCGCA GGAAATTGAA ACAGCCGAAC AGCTCTCGGC CGCGCGGGCA
GCGGGTATTT CTTGGGTTCA AGGGGCTCTG TTCGCAGAGG AGATGCCTCT GGCCGAACTA
GGCTCATCAG ACGATGAACC CACAACAGAG ACGGACACCG TTCTGTAA
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| Protein sequence | MGRWLRSIRL LIVGAALAVS VLVAVAMYWA TTGVFERTVR QSAVDMSASL ADGTFNAMYQ
IMRQGWSRAQ LDEFLKTIRA QSNDSSARIE LYRGSKVIAL FGQIEQPDPD ALVLSAFATG
KTQTQMHNGM IRYDRPLIAE AQCLRCHTNA KVGNVLGVLS IAQSVGQITT KAHNELVSKL
LIIMPIPLLA ALMIALLLGR RMGRSIARLK NSISYLDRVE DLAHIRFSDA HTGFSELDDV
LIEVDGLTDK IRHLAVDRNL LEFEIHLLER FVITSDVVRD WRRYVRDLLK EINTVQTVHG
VFTAFAVGDR PANVELFWFD TINETVAASM SQRVKLIVGE TLGQVATDFI PRQHSLDPSG
RPTLENARQL DLRTKEITMD NPSIHGLVGL ILPNTQNQSQ VERLLVESIL STMLNVVGSV
RAIEKHTEDL EFYATRDPLT QMYNQRMFWS LLDYEMDRAQ RHGYSFGLFV IDIDDFKVVN
DSYGHTFGDT FLCKVSECLH DALRTGDILA RYGGDEFTAI LPEAGEKECI MVADRLLARI
RNLSMKTPDG HSVGVSLSIG IGIGPTHTDS ARGLFSIADA QMYRAKLAGK NQFALPNPDE
PLADLHDKPI EDQDILEALT EEQPPRILFQ PIFAIGDASV EPLENLLLER VGMEVLAQLN
IGDRWVMARD FLGMVERRGQ AENFDRQLMK ALICTQVATH CNGLIFVNIS PRTVRAKSFL
ADIAHLMDTV GMARSRLVFE LNERESLADL NLFDRFIEEL HGFDFKFAID QTTPGHWIFQ
HLRRHTVDYV KINVDWLTNR SQIARDRAFI DCLLGLARAL SVTIIAQEIE TAEQLSAARA
AGISWVQGAL FAEEMPLAEL GSSDDEPTTE TDTVL
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