| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_2127 |
|---|
| Symbol | |
|---|
| ID | 8535286 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | - |
|---|
| Start bp | 2283069 |
|---|
| End bp | 2283839 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 646384504 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_003263991 |
|---|
| Protein GI | 261856708 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCAG GTTGGCTGGT CGTGGTATGG GGGTTCGTCG GAATCATCGC GCTGCTGGCA
TTGGCCGCTC GGTACAATGT CTGGCGTTGG CCGAAGCCGC TCGGCTGGCC GCGCATTTTG
ATGTATCACC GCATTCAACC TGCTGCTGCC AATCGACTTC GGGGCGAGGG AATCACGGCA
ACGACAACGC AGTTCGAGGC GCATCTGAAC TGGCTGGCTG CGCACGGTGC GCGATTCGTG
ACTGTATCTG AATTGATGGC CGCAGAAAAT CCGGCGCATA TGGTCGCGAT TACCTTCGAT
GATGGTTATG CGGACAACTT CAGCCATGCT TGGCCAATCC TGAAAAAATT TTCCGCTCCG
GCCACCATTT ATCTTGCGCC CGACATGCCG GATATCGAGC GGCTGAGCCC TGAAATGATT
GCCGAGATGA GCGCGGCAGG TATTGAGTTC GGCGCCCACA CGATGACTCA TATTCACTTG
CCTTCGAACA ACGACACTCG GGCGCTGGCC GAAATTCAAG CATCGAAAGC GGCGGTGGAA
TCCCTGACGG GTAGGCCTTG CATGAGTTTT GCCTATCCGT ACGGCAAATA CTCCGACAAG
CACGTCGCGA TGGTCGCCGC GGCCGGATTT TCCACCGCGG TGACCACCAA GAAAAAGATT
CTGCCGCGCC GGAAGTTCGA TCCGTTGTGT CTGCCGCGTT TGTCCATGGT CGGGCAAATG
AACGGTTTTG AGTTCTGGCT GACCATCACC CGAGGACGCT ATCGCGTATG A
|
|---|
| Protein sequence | MTAGWLVVVW GFVGIIALLA LAARYNVWRW PKPLGWPRIL MYHRIQPAAA NRLRGEGITA
TTTQFEAHLN WLAAHGARFV TVSELMAAEN PAHMVAITFD DGYADNFSHA WPILKKFSAP
ATIYLAPDMP DIERLSPEMI AEMSAAGIEF GAHTMTHIHL PSNNDTRALA EIQASKAAVE
SLTGRPCMSF AYPYGKYSDK HVAMVAAAGF STAVTTKKKI LPRRKFDPLC LPRLSMVGQM
NGFEFWLTIT RGRYRV
|
|---|
| |