Gene Hneap_2010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHneap_2010 
Symbol 
ID8535169 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothiobacillus neapolitanus c2 
KingdomBacteria 
Replicon accessionNC_013422 
Strand
Start bp2154960 
End bp2155841 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content53% 
IMG OID646384392 
ProductHflC protein 
Protein accessionYP_003263879 
Protein GI261856596 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID[TIGR01932] HflC protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0721507 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACATAA TTAACCGTGT CGTTCTGCCG ATCGTGGTGA TCGGTGTGTT CTTATTCGCT 
ACAGCCACCT TCGAGGTCAA GCAGTATCAG TCGGCGCTGG AGTTCCGTCT GGGTGAAATT
GTTCAGGACA AATTCGATCC TGGGTTGCAC TTCAAGTTGC CGTTCATCAA CACCGTCAAG
TTGTTCGACC GCCGCGTACT TACGATGACT TCACAGCCGG AACGGTTTTT GACCAGCGAG
AAGAAAAACC TGATCATCGA CTACTACATC AAGTGGCAAA TCATGAACGC GGCTGATTTC
TATCGCTCGA CGCGTGGCGA CGAACGAATC GCCATGAACC GGATGGACCA GATCGTTCGT
GACGCCATGA AAAGCCAGAT TTCCAGCCTC ACGGTGAACG AAGTGGTATC GGGTGATCGC
GATCTGTTCA TGAAGACCGT GATTGATACG ACCAACCGCG ACATCAAGGG CTTGGGTGTG
AAGATCAGCG ATGTGCGCAT CATGCAGATC GAATTGCCCA AAGAGGTGCG CCAATCTGTC
TATGCTCGGA TGGAGAAAGA GCGTTCCGCT GTCGCCCAGT CCATCCGCTC GCGCGGTGAG
GAGCAGGCCA AGAAGATTAC TTCGGCGGCC GATCGTGAAC GTGTGGTCAT CCTCGCCGAG
GCGGATCGTC AGGCCGCAGA AATCCGAGGT GCCGGCGATG CGGCCGCAGC CGCGACTTAT
GCCAAGGCTT ACGGCCAAGA TCCGAAGTTC TTTGAATTCG ATCGGAGTTT ACAAGCCTAC
AAGAAGGCTT TCGATCAAGG CGGGGATACT TTCGTACTGA ATCCTGATAG CCCGTTCTTC
AAGTATTTCC GTGATTCGCA AGAGTCGAAC GTAAAACACT GA
 
Protein sequence
MNIINRVVLP IVVIGVFLFA TATFEVKQYQ SALEFRLGEI VQDKFDPGLH FKLPFINTVK 
LFDRRVLTMT SQPERFLTSE KKNLIIDYYI KWQIMNAADF YRSTRGDERI AMNRMDQIVR
DAMKSQISSL TVNEVVSGDR DLFMKTVIDT TNRDIKGLGV KISDVRIMQI ELPKEVRQSV
YARMEKERSA VAQSIRSRGE EQAKKITSAA DRERVVILAE ADRQAAEIRG AGDAAAAATY
AKAYGQDPKF FEFDRSLQAY KKAFDQGGDT FVLNPDSPFF KYFRDSQESN VKH