| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1987 |
|---|
| Symbol | |
|---|
| ID | 8535146 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | - |
|---|
| Start bp | 2127020 |
|---|
| End bp | 2129941 |
|---|
| Gene Length | 2922 bp |
|---|
| Protein Length | 973 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 646384369 |
|---|
| Product | Protein of unknown function DUF2339, transmembrane |
|---|
| Protein accession | YP_003263856 |
|---|
| Protein GI | 261856573 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5373] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0361094 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGATTA CACTCACGTT TGTGGGGCTG ATTTTCGGGA TGGCGATGGC GGGAATCTGG
GGCGCGGCGT TTGGCGCACT GACCGGCTTT CTCGTAGCGC AGGTCAGTCG GTTGAATCGG
CAGGTTCAGG CCTTGATCGC CGATCAGATA TTGTTGCGAG ATGAATTGCG TCATCTGTCT
CAACCTCCGG CGCAGCGCGC GTCGCCATCC GAAGCGTCGA ATCCGCCCGC CGCGCCCGAA
CCCGCCGTGG ACGAAGTGGC GTCGTGCGCA CCCCAATCTA AACCCGATCT TGTGCCATCG
CACGAACCTT TGCCGGAATC TTCATCCGTG CCATTGAAGA CGGTTGGCGA GTCGCCTGTG
ATCGCGCGAA CCAACGCTTC GTTGCCTGAA AAAGACCCTG AAAACGGTGC ATCGGTCTCG
GCCTGGGGCG CGCCCTCGTC GGCCGAAACC GGAGCGCCAG ATGGCTTGTC GCGCCTGTGG
TCGAGCGTGT ACCGATTCCT CACCGAGGGC AATGTGGTCG CCAAGATCGG GGTGATCGTG
CTGTTTTTCG GCTTGGCCTT CCTGCTGAAA TACGCCGCCG ATCAGGCCCT GTTCCCGATC
AGCGTCCGCT TGACGCTTGT GGGTATCGGC GGGTTGGTGC TGCTCGGCAT CGGCTGGTAT
TTGCGTGAGC GACATACCGG TTATGCCCTT GTTTTGCAGG GCGGGGGCAT TGGTCTGACG
TATCTCACGT TATACGCCGC ATTTCGTCTG TACGGGTTGT TGCCGGCGGG CGTAACGATG
GGGCTGATGC TTCTGGTTGT GGCCGCTGCC GCAGTGCTGG CGGTCGTTCA GGATGCCCGG
AGCCTTGCCG TGCTGGGGAT TATTGGCGGT TTTCTTGCGC CGATTCTGGC GGGTAGCGAC
AGCGGAAGGC ATGTCGATCT GTTCAGTTAT TACCTTGTGC TCGATTTCGG CATCGTGTTC
GTCGCCTGGC GCAAGGCGTG GCGTGAACTC AACCTGCTGG CCTTTTTGTT TACGTTCGTG
ATCGGCACAA TCTGGGGTGG GTTGAACTAT AAGCCTGCGC TGTTTTCGAC AACCGAACCT
TTCCTCATCG GTTTTTATCT GATCTTTCTG GCGACAGCCC TATTGTTTGC GCGTCAGCAA
CGGGCAGGCG GTCAGCGTGA TTATGTGCAA TCCACCCTCG TGTTCGGCCC GCCCCTGGTC
GGGTTTGGGC TGCAAGCCGC TCTGGTCCAA AATTTCGAAT ACGGTCTGGC CTGGAGCGCA
TTCGGCTTGG GCGCGCTCTA TCTTGTGTTG TGGCTGGGGT TGCGGCGCGC TGTCGGTGAG
TATTTCAAGA TTCTGAACGA TGCTTTCCTG CTATTGGGCC TCGGTTTTGT TTCTTTGGCC
GTGCCGTTCG CGTTCGATGG GCAATGGACC AGCACCACCT GGGCGTTGGA AGGCGCGGCC
ATGCTTTGGG TCGGATTGCG GCAGGGGAAA ACTTGGCCGG TTGTGTTTGG CCTTTTGCTG
CAACTCGGTG CCGGCGTGGC GTTTGGCGAC GATCCTTCAT CGCTCGACCC GACACACTGG
CCTTTGCTGG ATGGCTATTT CCTGAGTGGC GGTTTGATTG CGCTTTCCGG GTTGGCGAGC
GCGTATTTGT TGCGTGATTG GCGAAACTGG GTGCCGGTCC CAGCCCTGTT GACCCTTTGG
GGATTGGCCT GGTGGTTCGG CACCGGTTTC TACGATCTGG CACATGTGGC GAGCTGGCTT
CAGCCGTTCA CGCTGTGGCT GATGTTCGCC AGTGCTTCGA TGCTGCTGGT CCAATGGGTG
CGCGGGCGGC TGCAGGACTG GTCGATTCTG CGCTATACGC TCGCGCTGCA AACCGTCTGG
ATGTGGGCGC TGGGCGGCTT GATTTTGCTG TTGAATATGA GCCCGTTCCA CGAAGGAGGC
TGGTTTGCAT GGCTATTGGC GTTCGCCACA CTCTATGGCG GGCTCTACTG GAGCGAGCGT
CGAAGCGAAT CCGTTTTCGC ATCCGAGCGC TTGCATGGTT TGGGCTTGTG GCTGCTGGCG
CCTGTGTTGG CGCCCCAATT GGCGGATGCG ATCTTCCGGG GACTGTTCGG GTTTACGCTG
TATTTCGGCT GGTTCGATTT GGGGCCAAGG GGCATCATGC ACCCGAACAC GCCCGGCGTT
TGGACGGCCA TGAGTTGGGG ATTGATACCG GTGTTGCTGC TGAGTTGGGT TGGTTCCGCC
CGTCACTGGC CCTTCGCTGA ACGATTTGGC CATGCGGCTG ACTATCGTGG ATGGGTCGCA
TCGGGATTGG GTGTGTTCTT ACTGGGTTGG ATGTTTATCG TCCACGGGCT GTGGGTGACT
GATCCTGTTA TGGGTGCAGG CTGGGGCCAA CCAGCACAGA TCGGTTATTT GCCATTATTC
AATGCACTCG ATTTTGTTTC TGCTCTGGCC CTGTTCGCCC TATGGCGACA TGGAAGACTG
ACCGGTGCGT ATTTCCTGAA CTATGCCGGT GAGCGAACAC AACAGGTGCT GCATTGGTTG
ATGGGCGCTG CCGCGTTTGT CTGGCTCAAT GCCATGATTG CCCGCAGCCT GAATGCGTAC
GCCGGGCTGC CGCTCGATGA CGGGCGGTTC CTGCACGAGG CGCTGGCGCA AACGACATAC
TCTATTGCCT GGTCGTTGTT AGGCTTGATA CTGATCGTGC TGGCTAGCCG ACTGAAGCAA
CGTCGTTTAT GGTTGGTGGC CGCCGGGTTG CTGGGCGTTG TGGTGCTCAA ACTTTTTCTG
GTCGATTTGT CCGGCAGCGA TACACTCGCC CGGATCATCT CGTTTGTCGG CGTGGGCGTG
CTGCTCTTGC TGGCAGGTTA TATCGCCCCG ATACCGGCCA AACAGGCCCC ATTTGCCAAT
GATGACCAGA ACACAAATGA CTCCGAACAG AAGGCCGACT GA
|
|---|
| Protein sequence | MMITLTFVGL IFGMAMAGIW GAAFGALTGF LVAQVSRLNR QVQALIADQI LLRDELRHLS
QPPAQRASPS EASNPPAAPE PAVDEVASCA PQSKPDLVPS HEPLPESSSV PLKTVGESPV
IARTNASLPE KDPENGASVS AWGAPSSAET GAPDGLSRLW SSVYRFLTEG NVVAKIGVIV
LFFGLAFLLK YAADQALFPI SVRLTLVGIG GLVLLGIGWY LRERHTGYAL VLQGGGIGLT
YLTLYAAFRL YGLLPAGVTM GLMLLVVAAA AVLAVVQDAR SLAVLGIIGG FLAPILAGSD
SGRHVDLFSY YLVLDFGIVF VAWRKAWREL NLLAFLFTFV IGTIWGGLNY KPALFSTTEP
FLIGFYLIFL ATALLFARQQ RAGGQRDYVQ STLVFGPPLV GFGLQAALVQ NFEYGLAWSA
FGLGALYLVL WLGLRRAVGE YFKILNDAFL LLGLGFVSLA VPFAFDGQWT STTWALEGAA
MLWVGLRQGK TWPVVFGLLL QLGAGVAFGD DPSSLDPTHW PLLDGYFLSG GLIALSGLAS
AYLLRDWRNW VPVPALLTLW GLAWWFGTGF YDLAHVASWL QPFTLWLMFA SASMLLVQWV
RGRLQDWSIL RYTLALQTVW MWALGGLILL LNMSPFHEGG WFAWLLAFAT LYGGLYWSER
RSESVFASER LHGLGLWLLA PVLAPQLADA IFRGLFGFTL YFGWFDLGPR GIMHPNTPGV
WTAMSWGLIP VLLLSWVGSA RHWPFAERFG HAADYRGWVA SGLGVFLLGW MFIVHGLWVT
DPVMGAGWGQ PAQIGYLPLF NALDFVSALA LFALWRHGRL TGAYFLNYAG ERTQQVLHWL
MGAAAFVWLN AMIARSLNAY AGLPLDDGRF LHEALAQTTY SIAWSLLGLI LIVLASRLKQ
RRLWLVAAGL LGVVVLKLFL VDLSGSDTLA RIISFVGVGV LLLLAGYIAP IPAKQAPFAN
DDQNTNDSEQ KAD
|
|---|
| |