| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1981 |
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| Symbol | |
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| ID | 8535140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | - |
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| Start bp | 2119416 |
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| End bp | 2123195 |
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| Gene Length | 3780 bp |
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| Protein Length | 1259 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 646384363 |
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| Product | exodeoxyribonuclease V, beta subunit |
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| Protein accession | YP_003263850 |
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| Protein GI | 261856567 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.335433 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCCCCTGA GTAAGTCAAA TATGCCCTTG CCACTCAATC CGCTGACGTT TCCATTCGCC
GGTAGTCGAT TGATTGAGGC CAGTGCGGGT ACGGGTAAAA CGTTCACGAT TGCCTTGCTT
TATGTCCGTT TGGTTTTGGG GCATGGCACA GAACCGTTGA TGCCGCCGCA AATTCTGGTG
ACCACCTTTA CCGATGCCGC CGCCGATGAG TTGCGGGATC GGATTCGCGC ACGGTTGTTT
GAGGCGTACC GCATTTTCTC CGAAGCCGGT TCTGAACTCG ATCCTATTGC GGTTGATCCG
TATTTACTTG ATTTAAGAGC GGCGTTTCCA ACTTCAGAAG AACGTCTTGC CGCCGCCCGT
CGCCTTGAAA TGGCAGCCAA CTGGATGGAT GAAGCGGCGA TTTTCACGAT TCATGGCTGG
TGTCAGCGGA TGCTGAACGA GCATGCTTTC CATAGTCGGG CCTTGTTCGA ACAGACGGTG
CGCACATCGT TGACACCGGT TGTCGATCAG GCTGTGCAGG ATTATTGGCG TCATTATATT
TATGCGTTGC CACCTGCTCA GGCGCTTTCC GTGGCGAATC TGCTGGGCGG ACCTTCCGCA
TTGACTCAAA AGCTCAACGG GCTGCTGTCG CGTGATGGTG CACCGCTGTT TGTGGATGGC
AAACCGGTTG ATCCTGCGGC ACTTGATTTT TTTGCGATGG TGGCCGACAT CGCCGAACTG
GATACTCAAG CCCAGCAAGC GGAGCAAGAT GCACGACAGG CTTGGTCAAA GCATGCTGAG
ACTTTGAAGG ATGCCTGGTT GCCCATTATG AGTGCGTTGA GTGGCACTTC GCACAGAACG
TTATCCAAAT TGACGGACTT CTCAACTCTT TGGGATAGCC TCGATCTGTG GGCACAAACC
GGCGAGCCGC TGCCAATTGA TGTATTCAAG TTTCTCACCC AACCCAAATT CAACAAGAAA
CTTGAACGAC CGTTTCATCC CGCGTTGGCG GTTTTTTCTG CATGGCCGGT TGCGATGGAG
GCTGCTCGTC ACGGCCGTGA GCAGTCGGCG ATCCGCTTGT TGGCCCACGC CGCATTCTGG
GTGCGTGATC GCATCGATAC GGTGTTGCAA CAAAATGCCG AAATGGGATT TGACGATATT
CTGTTGAACC TTGATCGCGC ATTGACGGGT GCTGAAGGCC AGCAACTCGC GGACACAATC
CGCACGCAAT TTCCCGTGGC GATGATCGAC GAGTTTCAGG ATACCGATCC GTTGCAATAC
CGCATTTTCG ATCGGGTGTT CCGAATCGGC GGGAATGGCG AGGCTGCGGG ACAAGCGGGT
ACGATGATTC TGATTGGTGA TCCGAAGCAA TCGATCTACC GTTTTCGGGG CGCGGACATG
TTCAGCTACC TTGCCGCCCG CGAGGCGACG CAAGGTCGGC ATTACACGCT TGATGCCAAT
TATCGCTCCA CGCCGGAACT GGTCGCAGCG GTGAATTATG TCTTCGAGCG CGCAGACCGC
CAGCCATCGG GTGCCTTTGG ACATAAAACG GATGAAGGCA ATCCGTTGCC CTTCATTCGC
GTCAGCGCGC GAGGAAAGGC TCGCCGTTTG CAACGGCGCA ATGAAGCCGG TGAGTGGCAG
CCGTGTCCCC CCCTGACGGG TTGGGCTTTG CCGCGCGATT CGCTGCTGGC GGCGGGTCAT
TTTGTTGAGC AAATGGCGGA GCATACCGCC GAGGCCATCA CTTCGAGTCT CAATGCGGCG
CAGGTTGGCG ATTGTGCATT TTTTGATGCC GAGGGCGCAA TGACAGCCTT GCGCCCGCAG
GATATTGCGA TTCTGGTGTC CACGGGCGAT CAGGCCGCGG TACTGCAACA GTCGCTCATT
CGTCGCGGCA TCAAGAGCGT GTATTTATCT GACCGGCATC GACTGTTCGC AACGGAGGAA
GCGGCGGATT TTCACCGCTG GCTGTTGGCG ATTGCCGAGC CGCAACGTCA GGACCGGCTT
CGTGCGGCGT TGGGTTCGTC AAGTTTCGCG CGCCATTGGG GCGAACTCGA TGCCGTTCGT
AACGATGCCC GACTGGATGA AGATACATCG AGATTCATGG CCTACCAGCG TATCACGCGG
CATCAGGGCA TTCTTGCGGC TGTGTATCAG CTCATGCATG ACTATCATAT TCCGGCCCGA
TTGTTGGCCG CGCCGCTGCC GGATCGTTCG GGCGAGCGGC GGCTGACAAA CCTCTTGCAT
CTGGCAGATT GGGCGCAGAA TGAACAGGCG CAATTGGCAG GATTGGATGC CCTGCTGCAA
CGGTATGCGC AGGCCGTCAG CGATAACGAA GCCGAGCATG AGCTCAGACT GGAGCAGGAT
GAGCATCTGG TGCGCATCAT CACGATCCAT TCCGCCAAAG GCCTGCAATA TCCTGTGGTT
TATTTGCCCT TCTTGCCCCT GATTCGCCCC AAAGAAGCGA ATAAAAACAG CACGGCGACA
CCCTGGCGAA CGAGCACCGG GCGCGGTATG AGTCTGGGCG AGTTCCCCGA AGCCATCGCG
GCGGAGCATG AGGCGCAGAT GACCGAGAGC GTAAGGCTGA TTTATGTCGC GCTCACACGA
GCTGAGTCAG CGTGTACCTT GGCGCTGGGG CCGGTCAAAT TCGGCGCGGG CAAGCAGCCC
AATCAGCATG AATCCGGCTT GGGGCATGTG TTGAGGCTTC AGGGAAATGA TGAGTTTATT
GCAAGTTTCG AGGCCGCATT GACTGATCTC GACGCTCAAG CGGGCGTGAC CATCGAGCCG
CCCCCATCGA TTACGCACGC ACGCTTCGTT GCCCCTGTAG AAGATAGTTT ACCCCCTGCG
CGAACGGCCA AACGACGGGT GGATAGCCAT TGGCGAATCA GCAGTTTCAG TGGTTTGACT
CATGCCCTGC ATGAATCGGA TGTCGCCGTG CCGGAAACCG CGAAGCAAGA GCAATTGAGG
GATGTGCTGT CACAAACCGG CACGGTCGAG GAGTCGCTTG ATCTGCCCCA GACCCACCGC
TTCGATCCGC AATCATTGTC CGCACGCATC AGCCACCTGC CGCGCGGCAC CACGTTCGGG
ACGCTGCTAC ACAGCCTGCT TGAGCGAGCG GGGGAGGCGG GGTTCAACCA GTCGGCGAAC
TTCGAGTTCA GTTTGAACCT GGTTCGCCAA CTCGCATCGA CGCTGACAGA AGATCAGCAA
AGTACGCTGG CCGAGTTGGT GCTTCGGATA TTGACGTTGT CCTTGGTAAC CACGCCATCT
CGACGATTGG CGGACGTGTC GAGATACCAG ATCGAGCAGG AGTTCTGGCT GCCTGTAGCT
CAAACTCAGA CAAGTTCTAT TGATGCATTG CTGTGCGCGC ATGTTCACCC CGGCCAGATG
CGACCGCTGC TCACCGCCCA ATATCTTGAA GGGCAGATCA AGGGATTTAT GGACTTGGTA
TTCGAAGCCG ATGGTCGGTT TTACATACTC GATTACAAGT CGAACTGGTT GGGCGATTCA
CCGGAAGACT ATGCGCCAGA GCATTTGGTT GACGCCATGC TGGCCGCCCG CTACGACCTG
CAGATGGTGT TGTATCTAAC CGCCTTGCAT CGACACTTGC AGGATCGTCT GCCCAATTAC
GACCCGGCCG TCCATCTCGG CGGAGCGCTG TATCTGTTCG TTCGTGGTAT CGACAGCCCG
GGGCAGGGTG TGTACTTCTC GCCGGCGAAT CCGACCGTGA TCGCTGCGAT GGATGCGCTG
CTGATGGATG ACGTTTCCCC GAATGGCGCT CATCCGGTTC GTATGGAGGC ATGGGCATGA
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| Protein sequence | MPLSKSNMPL PLNPLTFPFA GSRLIEASAG TGKTFTIALL YVRLVLGHGT EPLMPPQILV
TTFTDAAADE LRDRIRARLF EAYRIFSEAG SELDPIAVDP YLLDLRAAFP TSEERLAAAR
RLEMAANWMD EAAIFTIHGW CQRMLNEHAF HSRALFEQTV RTSLTPVVDQ AVQDYWRHYI
YALPPAQALS VANLLGGPSA LTQKLNGLLS RDGAPLFVDG KPVDPAALDF FAMVADIAEL
DTQAQQAEQD ARQAWSKHAE TLKDAWLPIM SALSGTSHRT LSKLTDFSTL WDSLDLWAQT
GEPLPIDVFK FLTQPKFNKK LERPFHPALA VFSAWPVAME AARHGREQSA IRLLAHAAFW
VRDRIDTVLQ QNAEMGFDDI LLNLDRALTG AEGQQLADTI RTQFPVAMID EFQDTDPLQY
RIFDRVFRIG GNGEAAGQAG TMILIGDPKQ SIYRFRGADM FSYLAAREAT QGRHYTLDAN
YRSTPELVAA VNYVFERADR QPSGAFGHKT DEGNPLPFIR VSARGKARRL QRRNEAGEWQ
PCPPLTGWAL PRDSLLAAGH FVEQMAEHTA EAITSSLNAA QVGDCAFFDA EGAMTALRPQ
DIAILVSTGD QAAVLQQSLI RRGIKSVYLS DRHRLFATEE AADFHRWLLA IAEPQRQDRL
RAALGSSSFA RHWGELDAVR NDARLDEDTS RFMAYQRITR HQGILAAVYQ LMHDYHIPAR
LLAAPLPDRS GERRLTNLLH LADWAQNEQA QLAGLDALLQ RYAQAVSDNE AEHELRLEQD
EHLVRIITIH SAKGLQYPVV YLPFLPLIRP KEANKNSTAT PWRTSTGRGM SLGEFPEAIA
AEHEAQMTES VRLIYVALTR AESACTLALG PVKFGAGKQP NQHESGLGHV LRLQGNDEFI
ASFEAALTDL DAQAGVTIEP PPSITHARFV APVEDSLPPA RTAKRRVDSH WRISSFSGLT
HALHESDVAV PETAKQEQLR DVLSQTGTVE ESLDLPQTHR FDPQSLSARI SHLPRGTTFG
TLLHSLLERA GEAGFNQSAN FEFSLNLVRQ LASTLTEDQQ STLAELVLRI LTLSLVTTPS
RRLADVSRYQ IEQEFWLPVA QTQTSSIDAL LCAHVHPGQM RPLLTAQYLE GQIKGFMDLV
FEADGRFYIL DYKSNWLGDS PEDYAPEHLV DAMLAARYDL QMVLYLTALH RHLQDRLPNY
DPAVHLGGAL YLFVRGIDSP GQGVYFSPAN PTVIAAMDAL LMDDVSPNGA HPVRMEAWA
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