Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hneap_1978 |
Symbol | |
ID | 8535137 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halothiobacillus neapolitanus c2 |
Kingdom | Bacteria |
Replicon accession | NC_013422 |
Strand | + |
Start bp | 2113162 |
End bp | 2116641 |
Gene Length | 3480 bp |
Protein Length | 1159 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 646384360 |
Product | transcription-repair coupling factor |
Protein accession | YP_003263847 |
Protein GI | 261856564 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGCCCA CCAGAACCGT TCCATTCGTC GCTCCGAAAT CATCGAACGA CCCGCTATTC CTCCGCAGTG CCAGCTTTAT CGGCACAGCC TTCAGCTTGG CCGAATTTGC CCGGCGCACC CCGCAGGCAC TTTTGGTCAT CACGCCCGAC AGCCGTCAAG CCAACGAGTT GGCCGAGGCG CTGGCTTTAT TCGACTTCCC TGCGGATATT TTCCCTGACT GGGAGGTGTT GCCCTACGAT CGCTTCTCGC CGCATCAGGA CCTGATTTCC GACCGGCTCG CCCGACTCTG GCATTTGCCG CGCACGCAAA GTGGTATCAC TCTGATCGCC GCGCCAACCG TGTTACAGCG TCTGGCACCG CCTTCGTTCG TCACCGGCCA CGGTTTTTTG CTCAAGGCAG GCGACACCCT CGATCGTGAG GCCTACCGCC AGCAACTCAC CGATGCGGGG TATCTGGCAG TTAGCCAAGT GGTGCAACCC GGCGAATTTG CGCTGCGCGG CGGACTGATC GATGTGTTCC CAATGGGCAT GAGCCAGCCG GTGCGGATCG ATCTGTTCGA CGATGAAATT GAAACTCTGC GGCTGTTTGA TCCGGAAACC CAACGCTCGG CCGATCCGGT CGCAGAAATC ACCCTGCTTC CCGCGCGTGA GTTCCCGCTC AACGAAGAAG GCATTGCCCT GTTTCGCCGT AATTGGCGCA ACCGCTTCGA GGGTGATCCG ACCCGCAGCC CTGTGTACAA ACAAATCAGC GAGGGCTTGA TTCCGGCGGG CATCGAAACC TATCTGCCTT TATTTTTTGA ACATACGGGT ACCCTGTTCG ACTATCTGCC CAAAGACGCC CTGTTGTTTA CGCTGCCCGG CGTCGATGAG GCATTAGCCA ATTTCATCGA AGACACCATC GCCCGCTTTA CCCAACGCGC CGGGGATGTC AGCCACCCAA TCCTACGACC AGACGAGCTT TATCAAACTG CCGAGCAATA CCAGCAACAG ATAAAAAGCT GGCCGCGGCT GATCACGCTG GATACAAACG ACCCGACCAT GCCGCAGGCC ATCGTCCTGC CACATCAACC GCTGCCGCCC ATGAGCGCGC CGGCACCCCG CTTGGCGCAA CGAGGAGAAG CCGAGCTCCT CGGTCTAACA ACATTTATAG AGACCTTCAC CGGACGTGTT CTGGTGACGG CGGAAAGCCC GGGCCGACGC GAAGCCTTGG GCGAATTACT ACAAAAAGCA GCGCACCCCG TCACTGTTTT CGAACACTTT GGGGATTGGT TGCGCAGCGA TGCGGGTCTG GGATTGCTGG TCTCACCCAT CGAACACGGG GCCATCATCC ATCTGCCCGA TGCGCCCGTC GCGCTGGTGA CCGAAACCGA TCTTTTTGCT GAACGCGTGG CACAGCGCCG CAAATCCAGC GCGCGCACCC GCGATGCCGA CGCGCTGATC AACAACTTAA ACGAACTGGC CGAAGGCGCA CCCGTGGTGC ATGAAACCCA CGGCGTCGGG CGATTTGGTG GCTTAGTCAC GCTGGAAATG AACGGGCTGG CGCAGGAGTT TCTGATCCTG TATTACGCCG GAGACGACAA GCTCTACGTA CCCGTTTCTT CACTGGAGCT CATTTCCCGC TACACCGGCG GCAGTGAAGA AACCGCGCCG CTGCATAGGC TTGGCAGCGG CCAGTGGGAA AAGGCCCGCA AGCGCGCCGC CGAACAGGTA CGCGATGTGG CCGCCGAACT ACTGGACATT CACGCCCGGC GCGCCGCCAA ACGCGGGCAG GCGCAGCCCA CGCCCGAGGA AGAATACGCC CGATTCGCCA ATAATTTTGC CTTTGAAACC ACGCCCGATC AGCAATTGGC GATCGATAGT GTGCTGGCAG ACATGGCACG CACGCAACCG ATGGATCGGG TGGTATGCGG CGATGTCGGT TTCGGCAAAA CGGAAGTCGC CATGCGGGCG GCCTTCGTGG CCGTGATGAA TGGCAAACAG GTCGCCGTGC TGGTGCCGAC CACGCTGTTG GCCGAACAGC ATTTGCGTAA TTTCCGCGAC CGTTTCGCCG GCTGGCCGAT CAACATCGAA GGCCTATCCC GCATGAGCAA TGCCAAAAAA ACCACCGAAG TGCTGGCCAG CGTGGCATCC GGCAAGGTTG ATGTGGTTAT CGGCACGCAC AAGCTGCTCA GCGACCATTT GGATTTCAAG GAACTGGGCT TGGTCATCAT TGACGAGGAA CAACGGTTTG GCGTACGCCA CAAGGAACAG CTCAAGCGCC TGCGCGCCGA GGTCGATCTA CTGACTCTCA CGGCTACGCC GATTCCACGC ACCCTGAACA TGGCGCTCTC CGGGATACGG GATCTGTCGA TCATCGCCAC GCCGCCGCGT GAACGGCTGT CGGTCAAAAC CCTGCTCTTG CGCTGGGATG ATGCCCAGAT TCGCGAAGCG GTACAGCGCG AACTCAAGCG CGGCGGACAG GTGTATTTTC TGCATAACGA GGTGCGCAGC ATCGAGCGGA TGGCCAAGCA ATTGGCCGAT CTGATTCCCG AAGCGCGGAT TGCCGTTGCC CACGGCCAGC TCTCGGAGCG CGGGCTGGAG CAGATCATGG CCGATTTCTA TCATCAGCGG TTCAATGTCC TGCTTTCGAC CACCATCATC GAATCGGGCA TCGACGTGCC CACCGCCAAC ACCATTTTGA TCAATCGTGC TGATAAATTC GGCCTTGCCC AACTGCACCA ATTGCGCGGG CGGGTTGGCC GGTCGCACCA CCGTGCCTAT GCCTATCTCA TCACGCCGGA ACCGGCGCAA ATGACCCCCG ATGCCGTCAA ACGCCTCGAT GCCCTGGCGG CACTCGAAGA ACTGGGCGTT GGCTTCACGC TGGCCACACA CGATCTGGAA ATTCGCGGTG CGGGCGAACT GCTGGGCGAT GGTCAATCCG GCCAGATGCA TGAAGTCGGT TACACGCTGT ACATGGACCT GCTCGATCGC GCCGTCAAAG CGCTTAAATC GGGCAAACAA CCCGATCTGG CCGGGCCGCT TGAACGCCAG ACCAGCGAAG TCGATCTTGG CCTGCCCGCG CTCATTCCCG CCGATTTCGT CGCCGATGTC CACACGCGCT TGATTCTGTA CAAGCGCCTG GCAAACTGCG CCGATCAAAC CGAGATAGAC CGCATGAAAG TCGAGCTGAT CGACCGCTTC GGCCTGCTGC CGGATGCCAC GCAAACGCTG ATCGAAACCC ATCGGCTGCG CTTGCTCGCT CGTGGCATCG GCATCAAGAA AATCGAATGT GCCAGCGGCG GCGCGCGCCT CGTGTTCGGT GAACAGGCCA CCATCGATCC GGTCAAACTG GTCAAACTCA TCCAAACCGA ACCGAATCGC TACCGCCTTA CCGCCGATAC GCTCAAGGTC ACACGAGCGG AAAACGAGCC AGCTTGGGAT GATCTGCCTG CGCGCAACCA AGTTATCCAG CAACTCATCA AACAACTGGT AGCCCAATGA
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Protein sequence | MAPTRTVPFV APKSSNDPLF LRSASFIGTA FSLAEFARRT PQALLVITPD SRQANELAEA LALFDFPADI FPDWEVLPYD RFSPHQDLIS DRLARLWHLP RTQSGITLIA APTVLQRLAP PSFVTGHGFL LKAGDTLDRE AYRQQLTDAG YLAVSQVVQP GEFALRGGLI DVFPMGMSQP VRIDLFDDEI ETLRLFDPET QRSADPVAEI TLLPAREFPL NEEGIALFRR NWRNRFEGDP TRSPVYKQIS EGLIPAGIET YLPLFFEHTG TLFDYLPKDA LLFTLPGVDE ALANFIEDTI ARFTQRAGDV SHPILRPDEL YQTAEQYQQQ IKSWPRLITL DTNDPTMPQA IVLPHQPLPP MSAPAPRLAQ RGEAELLGLT TFIETFTGRV LVTAESPGRR EALGELLQKA AHPVTVFEHF GDWLRSDAGL GLLVSPIEHG AIIHLPDAPV ALVTETDLFA ERVAQRRKSS ARTRDADALI NNLNELAEGA PVVHETHGVG RFGGLVTLEM NGLAQEFLIL YYAGDDKLYV PVSSLELISR YTGGSEETAP LHRLGSGQWE KARKRAAEQV RDVAAELLDI HARRAAKRGQ AQPTPEEEYA RFANNFAFET TPDQQLAIDS VLADMARTQP MDRVVCGDVG FGKTEVAMRA AFVAVMNGKQ VAVLVPTTLL AEQHLRNFRD RFAGWPINIE GLSRMSNAKK TTEVLASVAS GKVDVVIGTH KLLSDHLDFK ELGLVIIDEE QRFGVRHKEQ LKRLRAEVDL LTLTATPIPR TLNMALSGIR DLSIIATPPR ERLSVKTLLL RWDDAQIREA VQRELKRGGQ VYFLHNEVRS IERMAKQLAD LIPEARIAVA HGQLSERGLE QIMADFYHQR FNVLLSTTII ESGIDVPTAN TILINRADKF GLAQLHQLRG RVGRSHHRAY AYLITPEPAQ MTPDAVKRLD ALAALEELGV GFTLATHDLE IRGAGELLGD GQSGQMHEVG YTLYMDLLDR AVKALKSGKQ PDLAGPLERQ TSEVDLGLPA LIPADFVADV HTRLILYKRL ANCADQTEID RMKVELIDRF GLLPDATQTL IETHRLRLLA RGIGIKKIEC ASGGARLVFG EQATIDPVKL VKLIQTEPNR YRLTADTLKV TRAENEPAWD DLPARNQVIQ QLIKQLVAQ
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