| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1941 |
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| Symbol | |
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| ID | 8535099 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 2074892 |
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| End bp | 2077081 |
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| Gene Length | 2190 bp |
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| Protein Length | 729 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 646384322 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_003263810 |
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| Protein GI | 261856527 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ
[TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.77071 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAGCG TTATGGATGC AAAAACACTT TATCGACCAC TGACCCGAGC CATTCGGCAA
TCCTTGGGCG TATTATCGAT ATCAATTCTT ATTCCCGCCA TTGGTTATGC AGGCGACATC
AATACGATTA GTACCGACCG CACAGCGGAT GGTTCTATTC AGGTGCACTT CAAACTTTCA
TCGCCGTTAT CAGGAAGCCC AGACAACTTC CAGATTGACA ACCCGGCTCG TGTCGCGATT
GACCTGCCTG ACACAACAAA CAAAACAGGG GAACGGACTC AGAAGATAAA TCTGGGCCCG
GTGAAGTCCC TGATGATGGC CGAAGCCGGG GGTAAAACAC GTGTTGTATT CAACCTCACC
CAAGCCACCC CTTACGCGAT TAACCCGCAA GGCAACGAAT TAACCGTTAC CTTCAAACCC
GCCGCAACAA GCAACACGAC AGCAACTGGA TTGGCGGTCA GCACCATGGC TGACAATAAT
CCTGCTACCG CGATGGACCG TGGGCAAAGC ATTGATTTCC GCCGTTCAGC TGATGGTGCC
GGTCGACTGC TCATCCAGAC CTCCGGCCCG AATGCGCCCA TGAAAATGCG CAGCGAAGGC
AGCAATATCA TCATTGATCT GCCGAACACT CGTGTCGAGT CCGGTCGTTT TGGCGTAAAA
GACTTTGCCA CCCCAGTGGA ATCTGTAGAT GTCCGTCCAA TGGGAAGCGG TAGTCGCATT
ACTCTGAAAA CCCGCAACGC AGGCGAGCAC ATGGCTTATC AGACGGATAA CCGTCTGGTC
GTTGAAGTCA AGCCCGTACC TAAAGCTGAA GGCGCACAGA ATGTCGGCGA GAAAAAATAC
ACCGGTGAAC GCCTGACGCT CAAATTCCAA GACATTCAGA TTCGCCCACT GCTGCAACTC
ATTGCTGACT TTACTGGCAA CAACATTGTC GTCAGTGATG ACGTGAAAGG TTCTATCAGT
TTGCGTCTCG AAAATGTCCC TTGGGATCAG GCACTCGACC TGATCCTGAC GACCAAAGGC
TTGTCCATGC GCAAAAATGG CAATGTCATG TATGTAGCGC CAACAGCAGA CATTGTGGCG
CGCGACAAAG CTGAAATTGA GGCGCGTCAA CAATCTCAAC AACTCGCACC TCTTTCAACA
GATATCATCC AGATCAACTA CGCAAAGGCA GATGATATCT ACAAGCTACT TGAATCAGCC
TCCAAAACGG GCAAAACATC TGCGGATGGC AAAGGTGGTG ATACAGCGCA ACGTTTCATC
AGTGACCGAG GTAGCGTTAC AGTCGACCCT CGCTCCAATA GCCTGATTGT CACCGATACC
GCCAGTGCGC TTGACCGCAT CCGCGATCTC ATCCACAAAC TCGACAAACC CGTCAAGCAA
GTTCTGATTG AAACCCGCAT CGTCATTGCG ACCGATAACT TTGCCCGTCA ACTGGGTGTT
CGCTGGGGTG TGCAGGCCGG GTTCAACCGG GGCAACAGTA CTTTTGGTTT AGGATCTACA
GCACCCTTAG TCGCATCAGG AACAAGTTTG CCGACAGCGG GAGCATCTAC GGGTACGGTT
GGCACAGCGC CCACTGACTG GATGGTTAAT ACCCCAATCA GTGGCACCCC TGCCGGCAGT
TTAGGTCTCG CCATTCTGGG TTCTAACGTG CTGCTTGATC TGGAGCTCTC TGCACTTCAA
TCCGAGGGCA CCGGTGAAAT CGTCTCCAGC CCGAAAGTGA TAACCACCAA TGGTCATACG
GCCTTGATTT CTCAAGGGAC CGAGATTCCG TACATTGCGA CTCAAACGGC CGGTGGTGTG
GCCAGTAACA CGGTCAGCTT CAAGAAAGCC GTCCTCTCAA CAGAGGTCAC TCCGCAAATT
ACTCCGAACA ACAATATCAT CATGGATATT GACGTTAAAA AGGATGAGCC GGATTATACC
AATCTGCTGC CTGGGACAAC CAATCCGCCA ATCAATACGC GTGAGGTCAA AACCAAGGTC
GAAGTTAAAA ATGGCGAGAC CGTTGTACTT GGTGGCATCT ATCAGTTTGA AAACAACAAC
TCGATTAACA AGGTGCCTTT CTTTGGAGAC TTACCAGGCA TAGGTAACCT CTTCAAAAAT
AAAGAAGTAA AAAACCAACG TCTTGAATTG CTTATTTTCG TCACACCGAA AATCATCAAC
AGCGACCAAT CACTGGTAAA CAACGACTAA
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| Protein sequence | MNSVMDAKTL YRPLTRAIRQ SLGVLSISIL IPAIGYAGDI NTISTDRTAD GSIQVHFKLS
SPLSGSPDNF QIDNPARVAI DLPDTTNKTG ERTQKINLGP VKSLMMAEAG GKTRVVFNLT
QATPYAINPQ GNELTVTFKP AATSNTTATG LAVSTMADNN PATAMDRGQS IDFRRSADGA
GRLLIQTSGP NAPMKMRSEG SNIIIDLPNT RVESGRFGVK DFATPVESVD VRPMGSGSRI
TLKTRNAGEH MAYQTDNRLV VEVKPVPKAE GAQNVGEKKY TGERLTLKFQ DIQIRPLLQL
IADFTGNNIV VSDDVKGSIS LRLENVPWDQ ALDLILTTKG LSMRKNGNVM YVAPTADIVA
RDKAEIEARQ QSQQLAPLST DIIQINYAKA DDIYKLLESA SKTGKTSADG KGGDTAQRFI
SDRGSVTVDP RSNSLIVTDT ASALDRIRDL IHKLDKPVKQ VLIETRIVIA TDNFARQLGV
RWGVQAGFNR GNSTFGLGST APLVASGTSL PTAGASTGTV GTAPTDWMVN TPISGTPAGS
LGLAILGSNV LLDLELSALQ SEGTGEIVSS PKVITTNGHT ALISQGTEIP YIATQTAGGV
ASNTVSFKKA VLSTEVTPQI TPNNNIIMDI DVKKDEPDYT NLLPGTTNPP INTREVKTKV
EVKNGETVVL GGIYQFENNN SINKVPFFGD LPGIGNLFKN KEVKNQRLEL LIFVTPKIIN
SDQSLVNND
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