| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1924 |
|---|
| Symbol | |
|---|
| ID | 8535082 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | - |
|---|
| Start bp | 2057602 |
|---|
| End bp | 2058354 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 646384305 |
|---|
| Product | 3-oxoacyl-(acyl-carrier-protein) reductase |
|---|
| Protein accession | YP_003263793 |
|---|
| Protein GI | 261856510 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | [TIGR01830] 3-oxoacyl-(acyl-carrier-protein) reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00155305 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAATG AAACAAAAGG TCTGAATGGC AAGGTCGCGT TAGTGACCGG TGCATCCCGC
GGCATTGGTG CGGCTATCGC CGAGCAGCTC GCGCAATCGG GTGCGGTGGT GATCGGTACG
GCGACCTCGG ATTCTGGTGC GGCAGCTATC AACGAGCGAC TGGCACCGTT GGGCGGCGCG
GGGATGCGTC TTGATGTGAC CGATAGTGCG CAAATCGATG CCGTTCTTGC CGAGATCGAG
TCCCGTTTCG GCGCCGTGGC CGTGCTGGTC AACAACGCGG GCATCACCCG TGATACCTTG
CTTTTGCGCA TGAAGGACGA TGACTGGTCC GCTATCATCG ATACTAACCT CACCTCGGTA
TTCCGTCTGT CGCAAAAGGT ATTGCGCGGC ATGACCCGCG CCCGCTGGGG CCGGATTATC
TCGATTGCCT CGGTGGTTGG TTCCATGGGG AATGCGGGTC AAACCAATTA CGCGGCCGCC
AAAGCGGGCC TGATGGGCTT TTCCAAATCA TTGGCCCGTG AAGTTGGGGC GCGGAACATC
ACGGTCAACG TGGTGGCGCC CGGATTCATC GATACCGACA TGACGCGTGA CCTGCCCGAG
GCGCACAAAA CGGCATTATT GGCGAATGTG CCTCTGGGGC GGTTGGGCGA TCCGGCAGAA
ATTGCCGGTT GCGTTCGCTT TTTGGCGAGC GACGATGCCG CTTATGTGAC TGGTCACACC
CTGCACGTCA ATGGCGGTAT GTACATGAGC TGA
|
|---|
| Protein sequence | MSNETKGLNG KVALVTGASR GIGAAIAEQL AQSGAVVIGT ATSDSGAAAI NERLAPLGGA
GMRLDVTDSA QIDAVLAEIE SRFGAVAVLV NNAGITRDTL LLRMKDDDWS AIIDTNLTSV
FRLSQKVLRG MTRARWGRII SIASVVGSMG NAGQTNYAAA KAGLMGFSKS LAREVGARNI
TVNVVAPGFI DTDMTRDLPE AHKTALLANV PLGRLGDPAE IAGCVRFLAS DDAAYVTGHT
LHVNGGMYMS
|
|---|
| |