| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1834 |
|---|
| Symbol | |
|---|
| ID | 8534992 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | + |
|---|
| Start bp | 1968202 |
|---|
| End bp | 1969791 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 646384215 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_003263703 |
|---|
| Protein GI | 261856420 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | [TIGR01733] amino acid adenylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCCG ACCTGATTGC CCACCTGCTG CACCACGCTG AACATCGACC GCAGCGCATG
GCATTGCGGG AAGGTAACCG TGAACTCAAT TACGCTGAAC TCGCCTATCG CGTGCTGGCC
ATGGCAGCGG CTTTGCGCCA AATGGGTATC AAACCACAGG CGCGGCTTAT CGTGTGGGCG
AACAAGCGGC TGGAAACCGT GGTGGCATTG TTGGCGGCAC TGGCTGCGGA TATCGTCTTC
GTGCCGCTTC ACCCTGCCCT GCGCGCACCG CAAGTGCGAG ACATCTTTAA TCGCGCACAG
GCTCATGGGC TGTTGGTGGA TGCGCCGCAT GCAGTGGCCT TGGGCTTTTC TGAACCCTTC
ACCGGCGAAC TGAGGTTTTC GCCACATCCT GATCAACTCC CGCAGGAATT ACCCGAAACA
GAAGTAAGCA CCCATCCGCC CGCCCTGTCG AATGGCGATC CACACCGCCT CGCGGCCTTG
CTGTACACCT CCGGCAGCAC AGGTTTGCCC AAAGGCGTGA TGGTCACCCG CGCCAATCTG
AATGGTGGCG CGAACGCGGT TAGCCGGTAT CTCGATTTGA ACGCGCACGA TGAGTTACTC
GCTATCTTGC CGCTTTCATT CGATTACGGC CTCTCGCAAA TCACCACCGC GCTGACGGTC
GGTGCGGGCA TCACGCTGCA AGATTACCTG CTGCCGAACG ATCTGAAAAA GCCCTTGCTC
GATGGCGGCA TCACCGTTAT GGCGGGCACG CCGGGCCTGC TGATTCCACT GGCACGTCAA
GCCTGGCTTA GCGAGGCACC AAACCTGCGC TTAATAACAA ATTCTGGCGG AAAATTACCC
GTGGCGAGCG TTCACGCCTT GCGCAGCACC CGCCCACAGA CAAAGATTTT TCTGATGTAT
GGCCTAACGG AAGCCTTTCG CGCCAGCTTC CTGCCGCCTC AAGAAGTGGA CGATCACCCC
GATTCCATCG GTCGGGCATT TGAAGGCAGT CATCTGGAAC TGGTGGATGC AACCGGGCGC
TTGCTCCCGG CGCAGGCGGC GGGCGAAGGC GAACTGTTGC AAGGCGGGCC GCTCGTGACC
GCCGGTTACT TCAACGATCC AGAGGCCACG GCCCAGCGCT TCCGTGCGCC ACCAGCGGGC
TGGCCCCATC CTGAAGATGA TCGGGTTGTC TATTCGGGTG ATCGGATGCG GCGCGATGCA
CAAGGCCGTT TGTATTTTCT GGGCCGCATG GACGAGCAGA TCAAATCGCA GGGCATGCGC
GTCAGCCCCG AAGAAATCGA AGGTGTCGCT TTGCAATTCG ACGGCGTAAC CGAAGCGCTG
GCATTCGGCT ATCAAACCGA TGGCGAGGAA ACCCGAATCG GGCTTGTTGT CGCACCCGAA
ACCATTGCCA CCAATGCACT TCAAACATGG CTCCAAGCGC GGCTCGCGCC CTTCCAGATG
CCCGCCGCCA CGGTGGCCGT CGATGCCCTG CCCCGCTCGA ACAACGGAAA ACTAGATCGA
CAGGCAAGTC GCGCGCTGTT TCTTGATCGA CGCGCGGCAT CTTCAACAAA ACGGGCCTCA
AGTCCAAATT CGGGCACACT GGCGCCATGA
|
|---|
| Protein sequence | MPPDLIAHLL HHAEHRPQRM ALREGNRELN YAELAYRVLA MAAALRQMGI KPQARLIVWA
NKRLETVVAL LAALAADIVF VPLHPALRAP QVRDIFNRAQ AHGLLVDAPH AVALGFSEPF
TGELRFSPHP DQLPQELPET EVSTHPPALS NGDPHRLAAL LYTSGSTGLP KGVMVTRANL
NGGANAVSRY LDLNAHDELL AILPLSFDYG LSQITTALTV GAGITLQDYL LPNDLKKPLL
DGGITVMAGT PGLLIPLARQ AWLSEAPNLR LITNSGGKLP VASVHALRST RPQTKIFLMY
GLTEAFRASF LPPQEVDDHP DSIGRAFEGS HLELVDATGR LLPAQAAGEG ELLQGGPLVT
AGYFNDPEAT AQRFRAPPAG WPHPEDDRVV YSGDRMRRDA QGRLYFLGRM DEQIKSQGMR
VSPEEIEGVA LQFDGVTEAL AFGYQTDGEE TRIGLVVAPE TIATNALQTW LQARLAPFQM
PAATVAVDAL PRSNNGKLDR QASRALFLDR RAASSTKRAS SPNSGTLAP
|
|---|
| |