| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1758 |
|---|
| Symbol | |
|---|
| ID | 8534916 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | + |
|---|
| Start bp | 1892349 |
|---|
| End bp | 1893053 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 646384140 |
|---|
| Product | HAD-superfamily hydrolase, subfamily IA, variant 1 |
|---|
| Protein accession | YP_003263628 |
|---|
| Protein GI | 261856345 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0639278 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCTG TCCTTACACC ACCCCAACTG ATCATTTTTG ACTGGGACGG CACGCTGGTT
CAGTCCACCG GCCACATTGT GCGCAGCTTC GAGATGGCCA TCGCGCACAG TAACCTGCCG
CCGCTGGCGC CCGAAACGAT ACAAGGCATC ATCGGGCTCG GGTTAGTCGA AGCGTGCCGG
GCGCTCTATC CAAACCTTTC GCTTGAGCAG GCGCAGGCAT TAGGAAAAAC CTATCAGCAG
TTCTATTTCA GCCGAACCGA CACCCTCGAA ACCTATGCCG GGGCGACAAC CCTGCTGAAC
GATCTGCGCG AATCGGGCTG CTGGCTGGCC ATTGCCACTG GAAAATCGAA CAGAGGTTTG
CGCGAAGCAC TTGAAGAAAC AGGCCTGGGT CACTATTTTC TGGGTACACG AACAGCCGAG
CAAACCGCAT CCAAACCATC ACCCTTGATG CTGATGGAAT TGCTGGATGA ATTCGGGCTG
GAACCGGCGC AGGCCTGGAT GATCGGTGAT ACTGACTTTG ACTTACTGAT GGCACACAAT
GCGGGCTGCG TCCCCATCGC CATCACCCAC GGCGCACACG AAATCGAGCG TCTGCATGCC
GCCAAACCGG CCGCCGTCAT TCATGATCTA CCCAGCCTGT TGCCGCTGTT TCAGTCCGCC
ACCGCTCAAA AAGCGAGCCA GAATAAAGTG AGTACGAACG AATGA
|
|---|
| Protein sequence | MNPVLTPPQL IIFDWDGTLV QSTGHIVRSF EMAIAHSNLP PLAPETIQGI IGLGLVEACR
ALYPNLSLEQ AQALGKTYQQ FYFSRTDTLE TYAGATTLLN DLRESGCWLA IATGKSNRGL
REALEETGLG HYFLGTRTAE QTASKPSPLM LMELLDEFGL EPAQAWMIGD TDFDLLMAHN
AGCVPIAITH GAHEIERLHA AKPAAVIHDL PSLLPLFQSA TAQKASQNKV STNE
|
|---|
| |