Gene Hneap_1728 details

Gene Information

• Locus tag: Hneap_1728
• ID: 8534886
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halothiobacillus neapolitanus c2
• Kingdom: Bacteria
• Replicon accession: NC_013422
• Strand: -
• Start bp: 1854522
• End bp: 1856327
• Gene Length: 1806 bp
• Protein Length: 601 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 646384110
• Product: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
• Protein accession: YP_003263598
• Protein GI: 261856315
• COG category: [V] Defense mechanisms
• COG ID: [COG1132] ABC-type multidrug transport system, ATPase and permease components
• TIGRFAM ID: [TIGR02203] lipid A export permease/ATP-binding protein MsbA

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGGCAC ACGATTCCAC GCAGACGCCC GCATCGGGCT GGGCGACCTA CCGACGTTTG 
CTGCGCTATA CGCGCCAATA CACGCGTGTG CTGATCCTCG CCATCATCGG CATGGTGGCG 
GCCGGCCTGA CCGAAGTCGC TTTCGCTGCC CTGATGAAGC CGCTGCTTGA CGGCAGTTTC 
GTGAGCCGTG ACCCCACCAC GATCCATCTC ATGCCCGCAC TGCTGCTCGT CGTTTTTCTG 
GTGCGAGTTG TGGCCGAATT CGCTTCCGGC TATGGCATGG CCTGGGTCGG TCGATCCGTG 
ATTCGTGACC TTAAACGCGA CGTGTTCGAT CAGGTATTGC ACCTGCCGGT ACGTTATTTC 
GATCGTGTGC CCGGCGGTGA AATTCTGACG CGGTTGAATT ACCAGAGCGA ACAGGTTTCA 
GAGGCAGCTT CGCGCGCGCT GACGACGCTG ATTCGCGACA CGATTACCGT GTTCGGGTTG 
CTCGTATGGA TGCTTTATCT GAGTTGGCAA CTCGCCTTGT TTCTCGTCGT GCTTGCGCCC 
GTTCTGGTCG TGCTGGTTGG CGGAATCTCC AGGGCATTCC GCCGCCATGC CCGCCAGATT 
CAGAACTCCA TGGGGCAGGT TTCCCATGTG GCCGAAGAAG TGGTGGGCGG TCATCGCGTG 
GTCAAACTCT ACGGTGGGGA AGCCTATGAA GCGGCGCGTT TTGCCGCCAT CAATCAGCGC 
AACTTCAAGG ATTTCATGCG GATGCAGGCC GTCACGGCGG CTTCATCGCC GCTGACACAG 
TTCATTTTGG CGATTGGCAT TGCTGGCATC GTCTGGTTTG CGACGACCGG GGATCGGATG 
CAGACCATCA GTGTCGGTAC CTTCGTGTCC TTCATTACGG CACTGAGCCT GATGCTGACG 
CCCATGAAGC GTCTGATCGG TGTTAATGCC GTGCTGCAAA AGGGCATTGC GGCGGGCGAG 
AGCCTGTTTG GCCTGATGGA CGAACCACGC GAACACGATG CACCAATGCC TGTACCCATC 
GAACGGGTTT CGGGGCGGAT TCGTTTTGAT GGGGTCGGTC TGCGCTACGC GACAGGCGAA 
CAGGCACCTT GGGTGCTCTC GGATATCTCT CTGGACATCA ATGCGGGGCG AACCGTGGCG 
CTGGTCGGGC GCAGCGGTGC GGGCAAATCC AGCCTGATTG CCAGCCTGCC GCGTTTTGTG 
GATATTGATC GGGGCGATAT TTATCTCGAT GATCACCCCA TTTCCACGTT GAAGCTGACT 
GATCTGCGCC GGCAATTTGC CTATGTCTCG CAGGACACCG TTCTGTTCAA CACGACGGTT 
GCCGCCAATA TCGGCTACAG CGATGGGGGA CAGGAAGATC AAGCGCGTGT GCGCGCCGCG 
GCAGAAGCAG CCTTTGCCCT CGATTTCATC GAGCGGCTCC CGCAGGGGTT CGACACCGAA 
GTGGGTGAAA ATGGCGTATT GCTATCTGGA GGCCAGCGGC AGCGATTGGC CATTGCCCGC 
GCCCTGTACC GCGATGCACC GATTCTGATT CTGGATGAGG CGACATCGGC GCTCGATACC 
GAATCGGAAC GGTATATTCA GGCGGCTTTG GATAACCTTA GTCGTGGGCG GACAACGCTG 
GTGATCGCCC ATCGGCTGTC CACGATTGAA CACGCCGATA TGATTGTGGT GCTCGACAAG 
GGACGAATCG TTGAAACCGG TACGCATTCT GAACTGCTGG CAGCCGATGG TGCTTATGCC 
GCGCTGCATC GCTTGCAGTT CAAATCCGAT TCGGCATCGG GCTCAACTGT GGCCATGTCT 
TCGTAA 

 

Protein sequence

MTAHDSTQTP ASGWATYRRL LRYTRQYTRV LILAIIGMVA AGLTEVAFAA LMKPLLDGSF 
VSRDPTTIHL MPALLLVVFL VRVVAEFASG YGMAWVGRSV IRDLKRDVFD QVLHLPVRYF 
DRVPGGEILT RLNYQSEQVS EAASRALTTL IRDTITVFGL LVWMLYLSWQ LALFLVVLAP 
VLVVLVGGIS RAFRRHARQI QNSMGQVSHV AEEVVGGHRV VKLYGGEAYE AARFAAINQR 
NFKDFMRMQA VTAASSPLTQ FILAIGIAGI VWFATTGDRM QTISVGTFVS FITALSLMLT 
PMKRLIGVNA VLQKGIAAGE SLFGLMDEPR EHDAPMPVPI ERVSGRIRFD GVGLRYATGE 
QAPWVLSDIS LDINAGRTVA LVGRSGAGKS SLIASLPRFV DIDRGDIYLD DHPISTLKLT 
DLRRQFAYVS QDTVLFNTTV AANIGYSDGG QEDQARVRAA AEAAFALDFI ERLPQGFDTE 
VGENGVLLSG GQRQRLAIAR ALYRDAPILI LDEATSALDT ESERYIQAAL DNLSRGRTTL 
VIAHRLSTIE HADMIVVLDK GRIVETGTHS ELLAADGAYA ALHRLQFKSD SASGSTVAMS 
S