| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1694 |
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| Symbol | |
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| ID | 8534852 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 1822733 |
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| End bp | 1825996 |
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| Gene Length | 3264 bp |
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| Protein Length | 1087 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 646384078 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_003263566 |
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| Protein GI | 261856283 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGCCC ACCCAACCAA CAATAATGAC CAGCCACAAC GTGATGACTC AGCCGCCGTG
CAGCCCCTCG TTGAGAAGAT GGAACGCCAG CAAGCGTTAT TGCAATCCTT GCTTGGGCAA
ATCGACATCC TCATCTCTGC TGCCGACGAG CATGAGCTCC TGGATGTCGT TTGCACGCAA
TTATTGGCTT CCGGCTTGTT TGTTGGGGCA TGGCTCGGTC AAGTAGCATC ACCCAAGGCG
AATGAATTTA CGGTAATAAC GGCCGGCAGT AATGGGCGAG CAATTCTGGA TGTGCTGACC
CAAGAGCAAG CATCGGTTTT GAGTGATTTT CTTGCGCGTG CTCAATTCAA AGATCAGGCA
CTCGTCGAGG AATCCGATCT TACCGCGCTC ACCGAGCCCT GGCGACCGTT CGCGCCGAAC
AATGCCCATC TCAGCATTTT TTTCATTCCT ATCTTTCGCA ACGAATTACC CTGGGCCGTG
TTGGTGGTGG TGCACACTCA CGATCAGCCA TTAGACCGCC TTGTCAGCGA CACTCTGACT
CGCTTGGGTG AATTGATCGA TACCGCCTTG GGCCAACTGG ATTTGCGTAA GCAACTGAGC
GAAGAATACG AACGCACGGC GTATCTGGCC TATCACGACG CGCTGACTTC GTTGGCGAAC
CGACGCTTTC TCGATGAAGA GCTTCCCAAG GCGATGGCAC GCGCACAACG ACACGAGCAA
TCGCTTGCGA TCGTTATGCT CGATATTGAT GATTTCAAAC CGATCAATGA TCAATACGGT
CATGCCGTCG GTGATGAACT GCTGGTCGAC CTCGCCAACC GTTTAAGTAA AACCCTGCGT
TCATCCGATT TGGCCGTTCG TCAGGGCGGC GATGAGTTTA TTTTGCTCAT TGAGGGGATT
AACTCGAAAA ATGAACTGAC TCAGGGGCTC AATCGCATTC AAACAAGCCT GGATAAACCC
TACGAGCTAC CCGAAGGCAA AACCCATGTC CGATTCAGTA TGGGAATCAC CGTTTTCCCC
GAGGATGATG TTGCTCCCGA TATCTTGATC CGTCATGCCG ATGCCGCCCT GTATGCCAGC
AAAGATCAAA AATACAAACG CCAACTCCCA TGGCAGTTCT GGCATGAATT GGGAAGCGGC
GATGCAAACA CGCCTGTTGA CTCGTTTGAT CGCATACCGG CCTACGGCCC GGAAGCGGCC
GCATTGATCA AAAAAGTCTC GGCGGAAGTA AGACAGTTGA CCGAAGGATT TGTGGATCGG
TTTTACCGGG AGCTGGCTGC TGTCGACCGA GACTCGGGAA AAATCATCTC CTGGCTCAGT
GCAGAAGAAT ATGAACATTT ACGTTCAAGG CAAACCGAGC ATCTTGAATT TTTGCTCTCG
GCCGATCTCA CTGAAGAAGC ACACTGCACC AAGGCACGGG CGGTTGGCGA TATCCACGCG
TTCATTGGTG TTTCGGCAAG CAGCCTGGTG CGTGCTATCA CGGTGTACAT GCACCAATTC
GATGACGCTT CGCTGAAATT CCAGTTGGGT CGCAAGGATT TTAACAACCT GGAATCCATC
ATCACCTCCC GACTAAGCAC CGAGCTCTCG GAAGAACTTG AAGCCGAAGA GCAAATAAGC
GCGCAATTTC AAGAGGGCCT CAACGCAATC GATGCGTTAA GCAGAACCAA CACGTCGTGG
CAAAACTTTA ACGAGCAATT ACTTGAGATT CTCTGTGGCC TCCCCGCGAT AAAGGCGGCC
TGGATTGGCG CCCCGGATGA CCTGGGCCAA TTCGTCGTTA ATTTTGAGCA TTACGGGGAC
GAGATAGACA AAGTGCTCCA AGCGTATCCC GATCGGATCG AACTGCCGAG CGTCCTCACG
CAGGCAACCG GTTCGCAGGG CTCAACGGGC TTAGCATTTC GAACAGGCCA GGTGCAACGC
ATCAACAACT TCTCAACCAG CCTTAACGCT GAAAAATGGC GAAATGTAGC AAAGCATGTA
GGTATTCGCA GTTCGGTTAG CGTCCCTATT CTGGATGCGC AACGCAATTC GATCGCTGTG
CTCACGCTCT ACGGCGCCTA TCCGGGCATG TTCGAATCGC CTCATCGCGC ATCCTTCAGC
CATCAACTGG GCTTTATCGT CAGTCAGACG TGGGCTCAAT TTAATCAAGA CTCAGACGCC
ACGATCTCGA TTCATGAGAT CAACCGATGG CGGGAAGCCC TTTATGGCGA CGGTTTGCAC
TTCGTCTACC AGCCAATCAT TGACTTACAT ACCGGCAAGC TCAATAAAGT TGAAGCACTC
GCCAGACTGG ATCTATCCGA CGGCCGAACC ATCATGCCTG GACAATTTAT TCCAAGGCTC
AATGAACGCC AGATTATTTA TGTATTCAGA AAAGGCTTGG ATTTTAGTTT GCGCCAATTA
AGCGCGTGGC ATGAAAGCAA AAAGATGAAG GGTATTGGCT TATCACTTAA TCTGCCGTTG
GAAGCGTTAT TAAATTCACA CTGTATCGAT TGGGTTCGCG ATGCGTTAAG TCGCTTCAAT
GTATCGGCAA ATCATTTATG GCTTGAAGTA CTGGAACACT CCGAGACCGA AGATCACGTC
CATATGATTG CGCAAATGCA AAAGTTAAAT GAGCTTGGCG TGCATTTGGC GATGGATGAT
CTGGGCTCCG GTTACAGCAG CCTTATACGC CTCAACAAGA TGCCATTTGA TACCGTTAAA
ATCGATCAGG CGCTTTTACG CTCAGCGTAT GACGACCCAC CAAGAATCAT CAAGTTCATC
AGTGCATTGA TTCGTATGAC ACAAATCATT GATTTGGATG TCGTCGTCGA GGGTCTCGAG
CATCCGGATC TGATCGAGAC CGCTCGGATA CTGGGTGCCA AGTTTGGTCA AGGATACGGC
ATTGCTTTCC CCATGCCACC CAATCAACTT GAAAACTGGC TGAATAATCA AAAACCAAAT
TCACCCATTA GCGCCCCAAC AACACCCATG GGCGCCTTGG CCACACATAT GTCATACATT
GAAAATGCGA CTCATAAATG CGCGCCCATT CTGGAAGGAA AAGACCCGAC TCTTTGCCCT
GTTCATCGTT TCATTGAAGA ACACGGTTTG ATTGACAGCA AAATTGATCA TGCCCATCGA
GCCATTCATA AAACCAGTTC AAAAGATCAA AAGCTCTACG TTAAGTGCGC AAACAAATTC
CAAGCACTAC TGAGCCCGTT AATTATCGAG CCAGCATCGA AAATAGATAT GGGAAAACCG
CACGCAAACG ATACTCACCG ATGA
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| Protein sequence | MTAHPTNNND QPQRDDSAAV QPLVEKMERQ QALLQSLLGQ IDILISAADE HELLDVVCTQ
LLASGLFVGA WLGQVASPKA NEFTVITAGS NGRAILDVLT QEQASVLSDF LARAQFKDQA
LVEESDLTAL TEPWRPFAPN NAHLSIFFIP IFRNELPWAV LVVVHTHDQP LDRLVSDTLT
RLGELIDTAL GQLDLRKQLS EEYERTAYLA YHDALTSLAN RRFLDEELPK AMARAQRHEQ
SLAIVMLDID DFKPINDQYG HAVGDELLVD LANRLSKTLR SSDLAVRQGG DEFILLIEGI
NSKNELTQGL NRIQTSLDKP YELPEGKTHV RFSMGITVFP EDDVAPDILI RHADAALYAS
KDQKYKRQLP WQFWHELGSG DANTPVDSFD RIPAYGPEAA ALIKKVSAEV RQLTEGFVDR
FYRELAAVDR DSGKIISWLS AEEYEHLRSR QTEHLEFLLS ADLTEEAHCT KARAVGDIHA
FIGVSASSLV RAITVYMHQF DDASLKFQLG RKDFNNLESI ITSRLSTELS EELEAEEQIS
AQFQEGLNAI DALSRTNTSW QNFNEQLLEI LCGLPAIKAA WIGAPDDLGQ FVVNFEHYGD
EIDKVLQAYP DRIELPSVLT QATGSQGSTG LAFRTGQVQR INNFSTSLNA EKWRNVAKHV
GIRSSVSVPI LDAQRNSIAV LTLYGAYPGM FESPHRASFS HQLGFIVSQT WAQFNQDSDA
TISIHEINRW REALYGDGLH FVYQPIIDLH TGKLNKVEAL ARLDLSDGRT IMPGQFIPRL
NERQIIYVFR KGLDFSLRQL SAWHESKKMK GIGLSLNLPL EALLNSHCID WVRDALSRFN
VSANHLWLEV LEHSETEDHV HMIAQMQKLN ELGVHLAMDD LGSGYSSLIR LNKMPFDTVK
IDQALLRSAY DDPPRIIKFI SALIRMTQII DLDVVVEGLE HPDLIETARI LGAKFGQGYG
IAFPMPPNQL ENWLNNQKPN SPISAPTTPM GALATHMSYI ENATHKCAPI LEGKDPTLCP
VHRFIEEHGL IDSKIDHAHR AIHKTSSKDQ KLYVKCANKF QALLSPLIIE PASKIDMGKP
HANDTHR
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