Gene Hneap_1679 details

Gene Information

• Locus tag: Hneap_1679
• ID: 8534837
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halothiobacillus neapolitanus c2
• Kingdom: Bacteria
• Replicon accession: NC_013422
• Strand: +
• Start bp: 1802616
• End bp: 1804547
• Gene Length: 1932 bp
• Protein Length: 643 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 646384063
• Product: deoxyxylulose-5-phosphate synthase
• Protein accession: YP_003263551
• Protein GI: 261856268
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.107501
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCCCCA CTCCCAACCA TCCGACCGAT TTCAACTTGC TCGATCTGAT CGATCAACCG 
GCCGACCTGC GCCGCTTGCC GAAGCGACAA CTTGTCCAGC TCGCCACCCA ATTGCGTGCC 
GAACTGATCG AGCGCGTTGC ACAAACAGGG GGACATCTGG CGGCCAATCT CGGCGTCGTC 
GAACTGACCA TCGCGCTGCA TTACGTATTC AACACGCCCG ATGATCGACT GATCTGGGAT 
GTCGGTCACC AGAGCTATGG ACACAAGATG CTTACCGGGC GCCGCGAAGC CATGTCCGGG 
CTTCGGACGC GGGATGGCAT ATCCGGTTTC ACACGCCGGG TGGAAAGTGA TTTCGATCCC 
TTTGGCGCCG GGCATTCCAG CACCTCGATC AGCGCCGCGC TCGGCATGGC AGTGGCGGCC 
AAATTGCGCG GCGAAGACCA CCATGCCGTC GCGGTGATCG GCGATGGCGC ACTCACGGCC 
GGGCAGGCCT TCGAAGCCCT TAACCACGCG GGCGACATGA AGGCGAATCT GCTGGTGGTG 
CTTAACGACA ATGAGATGAG CATCTCAAGG AACGTCGGCG CGCTCAATCA GCACCTCACC 
CGACTTCGCA GCAATCCGGT CGTGAACAAA TTGCGTCAGG GTGGGCAGAA CCTGCTGTCT 
CAAACCGGCC CCTTGGGTGA AATCCTCAAT ACCACGCGCG TCGGCTTGCG CGATGGCATG 
AAACACTTGC TGGGCGTCAC CAGCCTGTTC GAAGAATTGG GCTTTGCCTA CTTCGGCCCC 
ATCGACGGCC ACGACCTGCC ACTGCTCGTC GACACGCTGG AGAACCTGCG GCGCCAGACT 
GGACCGCGCT TGCTGCACGT TGTCACCCAA AAAGGCCGAG GATTCAACCC GGCGGAACTC 
GATCCGGTTC GCTATCACGG CGTCGGAAAA TTCGATCCGG AAAAAGTTAT CAAGCTCGAA 
CCGCAATCCG TCAGCCAGAG CACGGCTCAA AAAACACCGC CACCCAAAAC CTGGACCATG 
GCCTTTGGCG ACTGGCTCGA CACCCAAGGC GGCAATCCGT CGGTCGTCGT GATCACGCCC 
GCCATGATCG AAGGCTCGGG TCTTGCCGGC TTTGCAGCAC GTCACCCGCA GCGCTGCTTC 
GATGTCGGCA TTGCCGAGCA ACACGCCGTC ACCTTCGCGG GGGGCCTTGC GGCAGAAGGC 
CTGCGCCCTG TCGTCGCCAT TTACTCCACC TTCTTGCAGC GCGCTTGGGA TCAGATGATT 
CACGATATCG CATTGCAAAA TCTGCCGGTA TTGTTCGCCG TAGATCGGGC CGGATTGGTC 
GGGCCGGATG GCGCAACCCA TGCAGGAAGT TTCGACCTTG CCTTCGGGCA GGCCGTGCCG 
AATCTGAAAA TCGCCGTACC CGCCGATGCC GCCGATCTTC ATGCCGTACT GGATTGGGGC 
ATTGCGGCCG ATTCACCCGT ACTGGTGCGT TATCCTCGCG GTGAGTGCCC GTCCGATCTG 
GGTGGCGAAG CCGCGCGCAC ACCGCTGGGT CTGCGCGTCC GGCGACGGGC CGAAGATCCC 
CATCAGAGCT TGCTGGTCAT CGCATTGGGT TCCAAGGTGC AAGCGGCATT AAACGCCAGC 
GCCGATCTGG CGGCCACCGT GGTTGACCTG CGTTGGGCCA AACCCATCGA CTGGCCGGCC 
CTGCTGCCGC TGATTCATGA ACATGCCGCC TGGATGATCA TTGAAGAAGG CAGCAAACTG 
AGCAGCATCG GCGCCAGCAT GATTGCGCAC ACGAGCGAAT TGGGCCTGTT CAAGCCAGTC 
AAACACATCG CGCTGCCCGA CACATTCATC GAACACGGCA CCCGCACAGA ATGCCTTGCC 
GATTGCGGAC TTGACGAACG TAGTCTAAAC AGTACGATGA CCGACTTTTT ACGGCAGGTA 
CTGCCCGCAT GA 

 

Protein sequence

MSPTPNHPTD FNLLDLIDQP ADLRRLPKRQ LVQLATQLRA ELIERVAQTG GHLAANLGVV 
ELTIALHYVF NTPDDRLIWD VGHQSYGHKM LTGRREAMSG LRTRDGISGF TRRVESDFDP 
FGAGHSSTSI SAALGMAVAA KLRGEDHHAV AVIGDGALTA GQAFEALNHA GDMKANLLVV 
LNDNEMSISR NVGALNQHLT RLRSNPVVNK LRQGGQNLLS QTGPLGEILN TTRVGLRDGM 
KHLLGVTSLF EELGFAYFGP IDGHDLPLLV DTLENLRRQT GPRLLHVVTQ KGRGFNPAEL 
DPVRYHGVGK FDPEKVIKLE PQSVSQSTAQ KTPPPKTWTM AFGDWLDTQG GNPSVVVITP 
AMIEGSGLAG FAARHPQRCF DVGIAEQHAV TFAGGLAAEG LRPVVAIYST FLQRAWDQMI 
HDIALQNLPV LFAVDRAGLV GPDGATHAGS FDLAFGQAVP NLKIAVPADA ADLHAVLDWG 
IAADSPVLVR YPRGECPSDL GGEAARTPLG LRVRRRAEDP HQSLLVIALG SKVQAALNAS 
ADLAATVVDL RWAKPIDWPA LLPLIHEHAA WMIIEEGSKL SSIGASMIAH TSELGLFKPV 
KHIALPDTFI EHGTRTECLA DCGLDERSLN STMTDFLRQV LPA