Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hneap_1649 |
Symbol | |
ID | 8534807 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halothiobacillus neapolitanus c2 |
Kingdom | Bacteria |
Replicon accession | NC_013422 |
Strand | + |
Start bp | 1779991 |
End bp | 1782462 |
Gene Length | 2472 bp |
Protein Length | 823 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 646384034 |
Product | TRAG family protein |
Protein accession | YP_003263522 |
Protein GI | 261856239 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCAAGA ACCCCTCTTC CCCGACTGAG CTTTACAACC TCTCCAATAA ATCGCCCGAG CCAGGCGGCT TGCAATTAAT GGGCGTGGCC GCTGGCTTGC TCATGTTGTT TACAGTGATG GTTGTCACGA CACAATACTT AGCATCTGCT TTGGATTATC AGGCAGCTTT GGGTTCGCCA CTGATCGGCA AGCTGTACGC ACCTTGGATG TTTGCCATCT GGCTGTGGCA ATACGGCAAT GTGCCAACCC TTAAATCGAT TGTATTTATC GCTTATGTGT TGCTGATTGG TGGGGCTGCG GTTGCCGTGA TTGGTGCGGC GCTCATCAGC TATTGGTATC GGCGCAAGTT TGGCAATGTC GGCATGGATT CCCTGCATGG GTCGGCGCAC TGGGCAAGCG AGGATGAAAT CAAGGAAATG GGGGTGTTCG ATTCCGCTGG GGTATTTATC GGCGCATGGA AAAATCCATG TGGAGATGTT CAGTATCTGC GTCACGATGG GCCTGAGCAT GTCATGGCCT TTGCGCCGAC TCGCTCTGGT AAGGGCGTGG GCTTGGTGTT ACCCACCTTG CTGGCATGGC GGCATTCGGC CTTGGTGTAC GACATCAAGG GCGAGAACTA TGCGCTAACA GCAGGCTGGC GCGAGAAGGA AGCTAACAAC CGCATTATCC GGTTTTCACC AACCGACATC ACCGGCTCGG CCAGTTACAA CCCTTTGAAT GAAGTGCGCT TGGGTACCCA GCGGGAAATC GCTGATATTC AGAACCTCGT GACGATGATT GTTGACCCAG ATGGCAAGGG CATGACCGAC CACTGGGCAA AAACAGGCCA TGCGTTGCTG GTCGGTACTG TGCTGCATGT GATGTATTCG GAGGAGGATA AAACCTTGCG CGGGGTGGCC ACATTTCTCT CTGACCCTTC GAGAACCTTG GAAGAATCTC TTGCCGAAAT GATTAATACG AATCACTTGG GCGATCGGCC GCACCCCGTC GTGGCCGCCT CAGCGCGCGA CATGATGAAC AAGGCTGATA ATGAACGCTC CGGCGTGCTT TCGACCGCCA TGTCGTTTCT TACGTTGTAC CGCGACCCCA TCGTGGCCTC AAACACCGAC AAATCCGATT TTGCCGTGGC CGACTTGATG AATGCCGAGC AGCCGGTATC GCTGTATCTC GTGGTGCCAC CTTCAGATAA AGACCGCTTA AAACCCCTGA TTCGTTTGAT GATTAACCAG ATTATCCGCA ACCTGACCGA ATCGATGGAG TTCAAAGATG GCCGTTCGGT GGCGGGTTAT AAGCATCGAT TGTTGCTGAT GATTGATGAG TTTCCCTCCT TGGGTCGGCT GGATATTTTT CAGGAAGCCT TGGCATTTAT CGCCGGTTAC GGCATGAAGG CGTATCTCAT TACCCAAGAT TTAAGCCAGC TTTACGCGGC GTATGGCAAA GATGAGTCGA TCATGTCGAA CTGCCATATA CGAATCGCCT ACGCGCCAAA CAAGATCGAA ACAGCCGAAT TGCTCAGCAA AATGAGCGGC ACCACCACGA TCATCAAGCG GCAAGAGAGT TTTTCAGGTG GGCGCACCAA GCTAATGCTC GATCAAATCA GCACCAGCAT TCAGGAAGTT CAGCGGCCAT TGCTCACGCC CGATGAAGCC TTGCGACTGC CGGGGCCGCA AAAGGATGGC CAAGGCAACA TCATGGAAGC GGGCGATATG CTGATTTTTG TCGCAGGCAA AGCGCCGATT TACGGCAAAC AAATTTTGTA CTTCAAAGAC CCGCTCTTTC TGGCACGCGC CAAGTTCCCC GCACCGAACG CGCGCCCAGT GGCAGCCGCT TTAAGCGCGC CAGCCCACGC AGCCGTGGCG GAAATCGATG AACAAACTCC GCAACAACCA GCGCCACTCA AGGCCGCGCC AAACTCAGTC GCACCGCCTT TAGGGAAAGG ACAAACCGGC GTTGCGTTTG CGCCGTTATC GCCCACGTCC AGCTCGGAAA ACCGTGAAAC CAGTGCCGTG CAGACGACAC CAATGACCGC CTCGACATCG GCCACGCTGA ACAGCGCAAC ATTTGCGCCT GCTCATTCCC CAGCCGAAGA ATCCAAACCG CATGAAAACA TCACAGCCGA ACCAGAATCA GAATCGCATG GGGAAGAAAT GACGGCGGAT GGTTTTGCCG TAATTCCAGA AGAAACGCAG GATTTGCTTC CAGCCGATTT AGATACGGGT GAGCCGGATG CCGAACGGTA TGGCACCGAG GATTTGGTGA TTTGTCATGC CGATGAGCCC GTCCGCGTAG CGCGCCAGCC GGATGACTTA TTAAACGAGT TCAAAGCCAT CACAGAAAAT GCCGAGATGG ATAGCGCCGA GCAGGCATGG TTCGCTGTGG CAGACGATAC ACCCGATGTC AGCGAATTAC GCGAAACCGA GATTAGCGAT GAAGGAACCG ATGCCATCTT CGATATTTTC AGCCCGCGAT AA
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Protein sequence | MAKNPSSPTE LYNLSNKSPE PGGLQLMGVA AGLLMLFTVM VVTTQYLASA LDYQAALGSP LIGKLYAPWM FAIWLWQYGN VPTLKSIVFI AYVLLIGGAA VAVIGAALIS YWYRRKFGNV GMDSLHGSAH WASEDEIKEM GVFDSAGVFI GAWKNPCGDV QYLRHDGPEH VMAFAPTRSG KGVGLVLPTL LAWRHSALVY DIKGENYALT AGWREKEANN RIIRFSPTDI TGSASYNPLN EVRLGTQREI ADIQNLVTMI VDPDGKGMTD HWAKTGHALL VGTVLHVMYS EEDKTLRGVA TFLSDPSRTL EESLAEMINT NHLGDRPHPV VAASARDMMN KADNERSGVL STAMSFLTLY RDPIVASNTD KSDFAVADLM NAEQPVSLYL VVPPSDKDRL KPLIRLMINQ IIRNLTESME FKDGRSVAGY KHRLLLMIDE FPSLGRLDIF QEALAFIAGY GMKAYLITQD LSQLYAAYGK DESIMSNCHI RIAYAPNKIE TAELLSKMSG TTTIIKRQES FSGGRTKLML DQISTSIQEV QRPLLTPDEA LRLPGPQKDG QGNIMEAGDM LIFVAGKAPI YGKQILYFKD PLFLARAKFP APNARPVAAA LSAPAHAAVA EIDEQTPQQP APLKAAPNSV APPLGKGQTG VAFAPLSPTS SSENRETSAV QTTPMTASTS ATLNSATFAP AHSPAEESKP HENITAEPES ESHGEEMTAD GFAVIPEETQ DLLPADLDTG EPDAERYGTE DLVICHADEP VRVARQPDDL LNEFKAITEN AEMDSAEQAW FAVADDTPDV SELRETEISD EGTDAIFDIF SPR
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