| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1617 |
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| Symbol | |
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| ID | 8534775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | - |
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| Start bp | 1755875 |
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| End bp | 1758334 |
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| Gene Length | 2460 bp |
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| Protein Length | 819 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 646384004 |
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| Product | CagE, TrbE, VirB component of type IV transporter system, conserved region |
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| Protein accession | YP_003263492 |
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| Protein GI | 261856209 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTAAAT TAAAACAATA CCGCGATGCC GCCGTAGGGC TGCCTGATTT ACTCAACTAT
GCGCTGATGC CAGATGAAGG CATTGTGCAG GGCAAAGACG GTTCGTTGAT GGCGAGTTGG
TACTTTCGGG GCGAAGACAT TGGCTCATCG ACAGCACAAG AACTCGCCCA ACTTTCCGCC
CGGCTAAATC ATGCCCTGGT GCAACTGGGC TCTGGCTGGA TGATCCATGT GGATGCCATC
CGCCAATATG CCCGCAGTTA TCCGCCTCTG TGCCCCTTCC CCGATCGCAC GACCTTGGTG
ATTGATGCCG AGCGCCGCGT GCAATATGAA CAAGAAGCAG CGCATCTGGA ATCAGTTTAC
GCCATGACGC TGACCCACCT GCCACCCAAG GCGGCTGAAA CCAAGATTGC GGGCTGGATT
TATTCCGGTA AGAAAAATGA CACTGAGGGC ATGGCTGGCC GCATACTCAA TAACTATAAA
AACGCCTTGC TGGATTTTGA GTCGGCTATT TCCGGGGTAC TCAAAGGCCG CCGCATGCGG
ACAACCGAGC ACACGGATGG CTTGATTGGC CACCACGCAT GGGGTGCCGC CTATACCCTT
GATGAGCAAC TGCGTTTTTT CAATTACTGC ATTACCGGCG AAGATCGCCC CGTGCGCCTA
CCCTCAGTGC CAATGTATCT GGATGCCCTC ATTGGCAATC AGCCCTTGCT GACCGGCGTT
GAACCCCAAG TCGGTGATAA ACACATCGCG GTAATTGCGC TGGATGGTTA TCCGCAAGAG
AGCTGGCCGG GGATGTTGGG CGCACTGGAT ACCTTGTCCA TTACCTATCG TTGGAACACA
AGATTTATCT TTTTGGACGG CCATGAGGCC AAAGCCATCA TGAATAAACA CCGCAAAAAG
TGGCAACAAA AACAGCGCGG TTTGAAGGAT CAAATATTCA AAACTTCATC CGGCGCGGTT
GACCTCGATG CCTTGCAACA AACCAATGAT GTCGAATCGG CCATGTCGGA AGTAGAATCC
GGCGTACTGA AATTTGGTTA TCACACCGCC AATATCATCG TGATGCACGA CGATCCGGTT
GTGCTTAAAG AACAAGCGCA AAAGGTGCGA AAAGCCATTT TAGAGCTTGG CTTCGGTGCT
CGAATTGAAA CCATCAACGC CGTTGAGGCT TGGCTGGGTT CCCTGCCCGG ACACAGCCAA
TACAATGTGC GCCGCCCGCT GCTGCACACC CTGAATTTAT CTGACATGCT GCCGATCACC
TCGGTTTGGG CAGGCAATGA ATTTAATCCA TGCCCTTTTT ATCCCGAGCA GTCGCCCCCT
TTAACCTACA CCGCCACCAC GGGACATACC CCGTTTCGCC TGTCGTTGCA TGTGGGTGAT
GTCGGCCATA CCCTCATGCT GGGTAAAACC GGCGGCGGGA AATCCACCGC GCTGGCCTTC
CTGGCCGCCC AGCATTTCCG TTACCCCGAT GCTCAGGTAT TCTCTTTTGA TAAGGGCTAT
TCGTGCTTCG TGCTCTGCAA TGCCGCCGGT GGCGAGTATT ACGACATTGC CGGTGAAGAC
AGTGAACTGG CCTTTTGCCC GCTGGCGCAA ATCGACACAA AAGAAGAACA ATCGTGGGCA
GTTGAATGGG TTGAAACCCT GCTTGTCCTT CAGGGCGTCA CGATCACCCC CAATAATCGC
AGCCTGATTT ATGACGCCGC GCAGCGGTTA AGCCATAGCA GCGTGCGCAC CCTGACTGAA
TTTGTCTCGC AAATTCAGGA TGTCGGGATG CGCAGTGCCT TGAACTACTA CACCGTGGCC
GGACCACTCG GCCATCTGCT GGATGCAGAA AAAGACGGCC TGAAAAACAA CCGCTACCAA
GTGTTTGAGA TGGAACATCT CATGAATATG GGCGAGAAGG CCGTGATTCC CGTTTTGCTT
TACTTGTTCC GTCAAGTCGA GCGGCGCTTG GATGGCCGCC CCACCTTAGT GTTCATCGAT
GAAGCTTGGC TTGCACTCTC GCATCCGATG TTCCGAGAAA AAGTGCGGGA ATGGCTGAAA
ACATGGCGTA AGAAAAACGC CGCTGCCGTG TTGGCCACGC AAGAACTGGC CGATGTCATG
AACAGCCCGA TTCGGGATGC CATTCTTGCC AGTTGCCCCA CGAAAATTTT GTTACCGAAC
CCCGAGGCAC AAGAACCCGC TCAACGGGAT TGGTATTACG AAATTGGCCT GAATGATCGG
GAAATCGAAA TTTTGGCCAC CGCAACACCC AAGCGTCACT ACTACTACAA GTCACCCAAT
GGCCGCCGGG TATTCGATCT TGGACTGGGT GCCGTTTCAC TGGCTTTTGT TGCCAAATCG
AGCCCGGAGC ATATCAAACA GGCCAGAGCC ATGATCGCCC AATACGGCGA TTCATGGCCC
GCACACTGGC TCGATCAACA CGGATTGAGC GACTGGGGGG ATTATTGGCG AACGCTTTAA
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| Protein sequence | MLKLKQYRDA AVGLPDLLNY ALMPDEGIVQ GKDGSLMASW YFRGEDIGSS TAQELAQLSA
RLNHALVQLG SGWMIHVDAI RQYARSYPPL CPFPDRTTLV IDAERRVQYE QEAAHLESVY
AMTLTHLPPK AAETKIAGWI YSGKKNDTEG MAGRILNNYK NALLDFESAI SGVLKGRRMR
TTEHTDGLIG HHAWGAAYTL DEQLRFFNYC ITGEDRPVRL PSVPMYLDAL IGNQPLLTGV
EPQVGDKHIA VIALDGYPQE SWPGMLGALD TLSITYRWNT RFIFLDGHEA KAIMNKHRKK
WQQKQRGLKD QIFKTSSGAV DLDALQQTND VESAMSEVES GVLKFGYHTA NIIVMHDDPV
VLKEQAQKVR KAILELGFGA RIETINAVEA WLGSLPGHSQ YNVRRPLLHT LNLSDMLPIT
SVWAGNEFNP CPFYPEQSPP LTYTATTGHT PFRLSLHVGD VGHTLMLGKT GGGKSTALAF
LAAQHFRYPD AQVFSFDKGY SCFVLCNAAG GEYYDIAGED SELAFCPLAQ IDTKEEQSWA
VEWVETLLVL QGVTITPNNR SLIYDAAQRL SHSSVRTLTE FVSQIQDVGM RSALNYYTVA
GPLGHLLDAE KDGLKNNRYQ VFEMEHLMNM GEKAVIPVLL YLFRQVERRL DGRPTLVFID
EAWLALSHPM FREKVREWLK TWRKKNAAAV LATQELADVM NSPIRDAILA SCPTKILLPN
PEAQEPAQRD WYYEIGLNDR EIEILATATP KRHYYYKSPN GRRVFDLGLG AVSLAFVAKS
SPEHIKQARA MIAQYGDSWP AHWLDQHGLS DWGDYWRTL
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