Gene Hneap_1580 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHneap_1580 
Symbol 
ID8534738 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothiobacillus neapolitanus c2 
KingdomBacteria 
Replicon accessionNC_013422 
Strand
Start bp1717984 
End bp1719222 
Gene Length1239 bp 
Protein Length412 aa 
Translation table11 
GC content49% 
IMG OID646383969 
ProductType II secretion system F domain protein 
Protein accessionYP_003263457 
Protein GI261856174 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1459] Type II secretory pathway, component PulF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCATTA CAGCGACGGC AAAAAAGAAA CCAAAGGACG ATAAAATCAT CTTCGTTTAC 
GATGCAAAAA ACAAAGATGG CAAGATAGTT AAGGGTGAAA TGAGCGCCCA TAACGAAATG
ATTGTTCGCG CAGAAGTTCG ACGACTGGGC CTGACAGTCA TCAAAGTCAG GAAAAAGCCC
AAACCTCTGT TCAGCAACAC AGCATCAATC AATGCCAAAG ACATCGCCGT TTTGGCACGT
CAGCTCGCCA CGATGATGCA AGCTGGCCTG CCCATCGTGC AGGCATTGGA CATCATGGCG
CAAAGTGCCG AAAAAGTACC CATGAAGGAG CTGATTTCCA CCGTTAAAAA TGACGTGGAA
AGCGGTTTGA CACTGGCAGA TGCCATGGAC AAACACCGCA AATATTTCGA TGAACTGTTC
GTGAACTTGG TCCGCGCGGG TGAAGATTCA GGCTCACTGG AGCTCGTCCT CGACCGCATT
GCCGTCTATA AAGAGAAAAG TGAAAGCCTG AAAGGCAAAA TCAAGAAAGC ATTGTTTTAT
CCCATTGCCG TGGTGGTAGT TGCCTTTATC GTTACCTCGA TTCTGCTGAT CTTCGTTATT
CCACAATTCC AAGAGCTGTT TCAAGGATTC GGGGCCACAT TGCCCGCGTT CACCCTGTTT
GTTATCGGCA TTTCCAATGC ATTCAAGACA AATTGGTATT GGATTTTTGG CGGAATCGGT
TTCGCTATTT TTCTATTTGT TTACGTCAAG CGTCGATCGG ATCGTTTCAA CCATTTCCTC
GACCAAATCA TCCTGAAAGT TCCAATTTTC GGTCCATTAA CCGAAAAAGC TGCCATTGCG
CGTTTTGCGC GGACACTGGG CACGATGTTC TCCGCCGGTG TACCGCTGGT TGAAGCAATG
GAACCGACGG CAGGATCGAC CGGAAACGCC TTGTTCAAAG ATGCCGTCAT GAACATGCGC
GACATCATTG CGGCCGGTTC ACCACTCAAA GTGGCGATGC AACAATCCAA GCTGTTCCCG
GTCATGGTCG TACAAATGGT GGCCATTGGC GAAGAAACCG GTGCTTTGGA TACCATGCTC
GGCAAGGTTG CCGATATGTA TGAGGAAGAA GTCGACAATA TGGTCGACGC CATGTCCAGC
TTGCTCGAAC CCATGATCAT GGCGTTCCTC GGCGTCGTGG TCGGTGGTCT TGTTATTGCT
ATGTACCTGC CGATCTTCAA ACTGGGTTCT GTGGTTTAA
 
Protein sequence
MAITATAKKK PKDDKIIFVY DAKNKDGKIV KGEMSAHNEM IVRAEVRRLG LTVIKVRKKP 
KPLFSNTASI NAKDIAVLAR QLATMMQAGL PIVQALDIMA QSAEKVPMKE LISTVKNDVE
SGLTLADAMD KHRKYFDELF VNLVRAGEDS GSLELVLDRI AVYKEKSESL KGKIKKALFY
PIAVVVVAFI VTSILLIFVI PQFQELFQGF GATLPAFTLF VIGISNAFKT NWYWIFGGIG
FAIFLFVYVK RRSDRFNHFL DQIILKVPIF GPLTEKAAIA RFARTLGTMF SAGVPLVEAM
EPTAGSTGNA LFKDAVMNMR DIIAAGSPLK VAMQQSKLFP VMVVQMVAIG EETGALDTML
GKVADMYEEE VDNMVDAMSS LLEPMIMAFL GVVVGGLVIA MYLPIFKLGS VV