Gene Hneap_1480 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHneap_1480 
Symbol 
ID8534637 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothiobacillus neapolitanus c2 
KingdomBacteria 
Replicon accessionNC_013422 
Strand
Start bp1599946 
End bp1601274 
Gene Length1329 bp 
Protein Length442 aa 
Translation table11 
GC content57% 
IMG OID646383870 
ProductRNA methyltransferase, TrmA family 
Protein accessionYP_003263359 
Protein GI261856076 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 
TIGRFAM ID[TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCGAAAAC CAAAGTTGCC GAAGGGTGAA TTTCAAGCCC AAATAGAATC CCTCACCCTT 
GAAGGTCGTG GTGTCAGCCA CATCGATGGC AAAGCCACAT TTATCGGTCG CGCGTTACCG
GGCGAGACGG TGCGCTTTAT CTACACCAAT CGGAAAAAAC ACTTTGACGA GGGCGATACC
GTCGCCGTCG AACAAACCTC ACCGGATCGC ATCACCCCAC CCTGCCCGCA CTTTGACCAA
TGTGGCGGCT GCTCTATGCA ACATCTCACC AGCGAGAAAC AACTGGCCAC CAAAGAACAA
GCACTACTCG ACCAACTGCA ACGCATCGGC AAGGTCAGCC CAGCAACCGT ACTGCCTGCA
TTGGCACGGG CGAATTGGGG TTATCGCCGC AAGGCCCGGC TCGGCGTCAA ATACGTACAG
AAAAAAGGGC GGGTGATAGT CGGCTTCAGA GAACGACACA CCCATTTTCT CTCCGATCTG
CAAAACTGCC GCGTGCTTGA TCCCCGCGTA GGCGAACGAC TGACCGAAAT TGGCGAGATC
ATCCACAGCC TGGAAGCCCG TGAACGCATC CCACAAATCG AAGTGGCCTG CGGCGATGAC
CGTGTAGCGC TGGTATTTCG CAACCTCGAC CCCCTGAGCC AGAGCGATAA GGAAAAGCTC
CGGAACTTCG GCACACAGGA AGGCTTCGAC ATCTACCTTC AACCCGGGAG CAACGACAGC
GTTCACCCAC TCGACAAAGC GCACGTCGCC CCGCTGACAT ACGCGCATCC CAGTTTCGAT
GTCTCCATAG AATTCACGCC ACTGGACTTC ATCCAGATCA ATACGGACGT CAATCGGGCC
ATGATTGTGC AGGCACTGGA ATGGCTGGAT GTGCAACCGG GCGATCATGT ACTCGACCTT
TTCGCCGGAC TCGGAAATTT CACCCTACCC ATCGCCCGCA AGGCCGCCAA AGTAACCGCC
GTTGAGCTAG ATGAACACAT GGTCAAGCGC GGTGCGCAAT CGGCCGCCGC CAACGGCATC
ACAAATACCG AACATGTCAT CGGCAACCTG TTTGAACCCG ATCCGACTCA TCTCTGGATG
CAACAAACCT ACGACCGCGT TCTGCTCGAC CCACCCCGCG CCGGCGCCGA AGCCATGATG
CCGCACATCG CGCGCTTCGC CCCCGAACGG ATTGTGTATG TATCCTGTCA TCCGGGCTCA
CTGGCACGCG ATGCCCACAT CCTGGTACGT GAACACGGCT ACCGCCTGAT CGCTGCGGGC
GTCATGGACA TGTTCCCGCA TACCAGCCAC ATTGAATCCA TGGCCGTATT CGAGCGAGCA
AAGACATAA
 
Protein sequence
MRKPKLPKGE FQAQIESLTL EGRGVSHIDG KATFIGRALP GETVRFIYTN RKKHFDEGDT 
VAVEQTSPDR ITPPCPHFDQ CGGCSMQHLT SEKQLATKEQ ALLDQLQRIG KVSPATVLPA
LARANWGYRR KARLGVKYVQ KKGRVIVGFR ERHTHFLSDL QNCRVLDPRV GERLTEIGEI
IHSLEARERI PQIEVACGDD RVALVFRNLD PLSQSDKEKL RNFGTQEGFD IYLQPGSNDS
VHPLDKAHVA PLTYAHPSFD VSIEFTPLDF IQINTDVNRA MIVQALEWLD VQPGDHVLDL
FAGLGNFTLP IARKAAKVTA VELDEHMVKR GAQSAAANGI TNTEHVIGNL FEPDPTHLWM
QQTYDRVLLD PPRAGAEAMM PHIARFAPER IVYVSCHPGS LARDAHILVR EHGYRLIAAG
VMDMFPHTSH IESMAVFERA KT