Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hneap_1480 |
Symbol | |
ID | 8534637 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halothiobacillus neapolitanus c2 |
Kingdom | Bacteria |
Replicon accession | NC_013422 |
Strand | + |
Start bp | 1599946 |
End bp | 1601274 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 646383870 |
Product | RNA methyltransferase, TrmA family |
Protein accession | YP_003263359 |
Protein GI | 261856076 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGCGAAAAC CAAAGTTGCC GAAGGGTGAA TTTCAAGCCC AAATAGAATC CCTCACCCTT GAAGGTCGTG GTGTCAGCCA CATCGATGGC AAAGCCACAT TTATCGGTCG CGCGTTACCG GGCGAGACGG TGCGCTTTAT CTACACCAAT CGGAAAAAAC ACTTTGACGA GGGCGATACC GTCGCCGTCG AACAAACCTC ACCGGATCGC ATCACCCCAC CCTGCCCGCA CTTTGACCAA TGTGGCGGCT GCTCTATGCA ACATCTCACC AGCGAGAAAC AACTGGCCAC CAAAGAACAA GCACTACTCG ACCAACTGCA ACGCATCGGC AAGGTCAGCC CAGCAACCGT ACTGCCTGCA TTGGCACGGG CGAATTGGGG TTATCGCCGC AAGGCCCGGC TCGGCGTCAA ATACGTACAG AAAAAAGGGC GGGTGATAGT CGGCTTCAGA GAACGACACA CCCATTTTCT CTCCGATCTG CAAAACTGCC GCGTGCTTGA TCCCCGCGTA GGCGAACGAC TGACCGAAAT TGGCGAGATC ATCCACAGCC TGGAAGCCCG TGAACGCATC CCACAAATCG AAGTGGCCTG CGGCGATGAC CGTGTAGCGC TGGTATTTCG CAACCTCGAC CCCCTGAGCC AGAGCGATAA GGAAAAGCTC CGGAACTTCG GCACACAGGA AGGCTTCGAC ATCTACCTTC AACCCGGGAG CAACGACAGC GTTCACCCAC TCGACAAAGC GCACGTCGCC CCGCTGACAT ACGCGCATCC CAGTTTCGAT GTCTCCATAG AATTCACGCC ACTGGACTTC ATCCAGATCA ATACGGACGT CAATCGGGCC ATGATTGTGC AGGCACTGGA ATGGCTGGAT GTGCAACCGG GCGATCATGT ACTCGACCTT TTCGCCGGAC TCGGAAATTT CACCCTACCC ATCGCCCGCA AGGCCGCCAA AGTAACCGCC GTTGAGCTAG ATGAACACAT GGTCAAGCGC GGTGCGCAAT CGGCCGCCGC CAACGGCATC ACAAATACCG AACATGTCAT CGGCAACCTG TTTGAACCCG ATCCGACTCA TCTCTGGATG CAACAAACCT ACGACCGCGT TCTGCTCGAC CCACCCCGCG CCGGCGCCGA AGCCATGATG CCGCACATCG CGCGCTTCGC CCCCGAACGG ATTGTGTATG TATCCTGTCA TCCGGGCTCA CTGGCACGCG ATGCCCACAT CCTGGTACGT GAACACGGCT ACCGCCTGAT CGCTGCGGGC GTCATGGACA TGTTCCCGCA TACCAGCCAC ATTGAATCCA TGGCCGTATT CGAGCGAGCA AAGACATAA
|
Protein sequence | MRKPKLPKGE FQAQIESLTL EGRGVSHIDG KATFIGRALP GETVRFIYTN RKKHFDEGDT VAVEQTSPDR ITPPCPHFDQ CGGCSMQHLT SEKQLATKEQ ALLDQLQRIG KVSPATVLPA LARANWGYRR KARLGVKYVQ KKGRVIVGFR ERHTHFLSDL QNCRVLDPRV GERLTEIGEI IHSLEARERI PQIEVACGDD RVALVFRNLD PLSQSDKEKL RNFGTQEGFD IYLQPGSNDS VHPLDKAHVA PLTYAHPSFD VSIEFTPLDF IQINTDVNRA MIVQALEWLD VQPGDHVLDL FAGLGNFTLP IARKAAKVTA VELDEHMVKR GAQSAAANGI TNTEHVIGNL FEPDPTHLWM QQTYDRVLLD PPRAGAEAMM PHIARFAPER IVYVSCHPGS LARDAHILVR EHGYRLIAAG VMDMFPHTSH IESMAVFERA KT
|
| |