| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1438 |
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| Symbol | |
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| ID | 8534595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 1549590 |
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| End bp | 1551134 |
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| Gene Length | 1545 bp |
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| Protein Length | 514 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 646383829 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_003263318 |
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| Protein GI | 261856035 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0115018 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATGATT TAGCCTGCTG GCGTGATCGG TTTTCCGCCC CAATGCTGAA ATTGGGCACG
CTGCTATCAC TGACAATGCT CGCCGGCTGT TCAGCCGTTG GGCCTGATTT TGTTGCACCT
GCCGCACCGG ACATTCCCGG TTACACCGCG CAAGCGATGC CCAAAAGCAC CAAGGCAACC
ACCGGTATCG AACAAGGTGA AGCTCAGTCC CTCAAGCAAG CATCATTTAT TCAGGGTGAT
TGGTGGAAGG CATTTCATTC ACCCGCACTG AACAAGCTGA TTGAACAGGG CATGGCCGCA
AGTCCCACGC TTACCGCTGC CGAGGCCAAA CTGGAACAGG CTCGACAAAC CTACGCCGCT
CAATACGGTT CCACGGAGCT ACCGCAGGTT AATGGCAAAC TCAGCGGCCA GAAGCAGAAG
ACCAACAATT CGGGTATCGG TCAGGAAGGA AACGGGCGTG TCTTCGGCCT GTATAACGCG
GGTGTGACCG TCAGTTACAA TCTTGACTTG TTCGGCGGTA ATCGCAGAGC ACTCGAAGCT
TTGGCTGCCC AAACCGATTA CCAGAAATAT CAGCTGGATG CCGCACGGCT TACCTTGGCG
GGCAATATCG CTGTTCAGGC CATGATGCAG GCGATGTATA ACGATCAGAT CGCAACGACC
AAAAACATCA TCAGCAATCA AGAGGAACAG CTGAAGCTGA TTCGGTCACG CCTTGAGTTG
GGCGCCGCGA CCCAAAGCGA CGTGCTGACA CTTCAAACCC AATTGGACCA GACGCGAGCC
ACTCTGCCCC CGCTGATACT CAAACGCGAC CAAAGCGACC ATTTGCTGGC GACATTGGTC
GGACAACCGC CAAGCAAGGT CATGCCTGTA TTCAGCTTGA GCGATTTCAC GCTGCCAGCC
GAGCTTCCCG TTGTCGTCCC ATCACAATGG GTTGCCTCGC GGCCAGATAT TCAGGCCTCA
ACCGCATTAC TGCATCAGGC ATCGGCCCAG TACGGTGTCG CCGTTTCCAA CCTGTATCCG
CAAATCAATT TATCGGCCAC TGTGGGCTCT CAAGGCCTTA CACCTGCCAG CCTGTTTGAT
GCCAACTCGA TTATCTGGAG TTTGATTGCT GGTCTGACAC AGCCAATCTT CAACGCAGGC
CTCGAATCTG GAGCCAAGGC AGCCAAGGCC TCACTTTCTG CCGCCGCAGC TAATTATCAG
CAAACCGTGT TAAACGGCTT GCGCAATACC GCGGATGCCT TGCGCGCAAC TGCCATCGAT
GCTGACACGC TCAATGCCCA AGCAGCGGCT GAACGCTCAG CTCAGGCATC GCTCGATCTA
ACACAACAAC AGATGAAGCT AGGTGCAATA AATTCGCTAC AGCTTCTGAC TGCACAACAA
CAGGTCGCAC AGACGCAACT TCTGACACTG GCTGCCCGTT CGCAACGACT CACAGACAGC
GTTGCCCTGT ACCAAGCCAT GGGCGGCGTA CCAACAGCAG ACCCGAATCA ACCTCAAACC
TTGTCACAAG TTCAAACAGC TAAGCCGGAG AAAAACACAC CATGA
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| Protein sequence | MHDLACWRDR FSAPMLKLGT LLSLTMLAGC SAVGPDFVAP AAPDIPGYTA QAMPKSTKAT
TGIEQGEAQS LKQASFIQGD WWKAFHSPAL NKLIEQGMAA SPTLTAAEAK LEQARQTYAA
QYGSTELPQV NGKLSGQKQK TNNSGIGQEG NGRVFGLYNA GVTVSYNLDL FGGNRRALEA
LAAQTDYQKY QLDAARLTLA GNIAVQAMMQ AMYNDQIATT KNIISNQEEQ LKLIRSRLEL
GAATQSDVLT LQTQLDQTRA TLPPLILKRD QSDHLLATLV GQPPSKVMPV FSLSDFTLPA
ELPVVVPSQW VASRPDIQAS TALLHQASAQ YGVAVSNLYP QINLSATVGS QGLTPASLFD
ANSIIWSLIA GLTQPIFNAG LESGAKAAKA SLSAAAANYQ QTVLNGLRNT ADALRATAID
ADTLNAQAAA ERSAQASLDL TQQQMKLGAI NSLQLLTAQQ QVAQTQLLTL AARSQRLTDS
VALYQAMGGV PTADPNQPQT LSQVQTAKPE KNTP
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