| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1435 |
|---|
| Symbol | |
|---|
| ID | 8534592 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | + |
|---|
| Start bp | 1547143 |
|---|
| End bp | 1547886 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 646383826 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_003263315 |
|---|
| Protein GI | 261856032 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.674254 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAATGA CCACTCAAGA CGCATACGCT CCGGACTTGT TTGAACGCGA AATAACGGTC
CTGAACAAGG CGAAACAGGC TAAAGTTAAT TTTTCGTCGC ACGCCGATCA CTCGGCATTA
TCGGAATTGA TTGACGAATA TGAACGCGTG ATCCGCGAAA TGCGTCGGGT CATCGCCCAT
TCGGACAGAA CCGAGCGTGA ACTCAATAAT GCGAACCAGC GTTTGCGCGA ACTGACCGAG
GCGTTGACAT TCCAGAACCG TCACGATGGC TTAACAAGGT TGTTGAACCG CACGACGCTT
ATCAATGAGG CGGAACAACT TCTCAAAACG ACCAAATCCG CTCTGATCAT GATCGATATC
GATCACTTCA AGCAGATCAA TGATCGCTAC GGCCATCCCA CGGGCGATAG AGTGCTCGTC
GGATTGGCGG ATACGCTGCG CTCGATAATA CAGCCACCCG CGCTATGCGG ACGTCTCGGC
GGAGAAGAAT TCGCCATCGT CTTACCCACG AATCAACTCG AAGAAGTCAT CAGTCTGGCC
GAGAAAATCA GCGAGGAGAT CAGAAATCTG CGTTGCGAAA GCGAACTCGG CCTGCGCATG
ACAGCCTCGC TCAGCATTAC CTTGGCGAGA CCCGGCGTGA ACTTCGACAC ACTCTATCTT
TGCGGCGACG ATGCCCTGTA CAGGGCCAAG CACGATGGTC GAAACCGGAT CGAAGTCGTC
CCCCATCCGC TCAACCCCAC GTGA
|
|---|
| Protein sequence | MIMTTQDAYA PDLFEREITV LNKAKQAKVN FSSHADHSAL SELIDEYERV IREMRRVIAH
SDRTERELNN ANQRLRELTE ALTFQNRHDG LTRLLNRTTL INEAEQLLKT TKSALIMIDI
DHFKQINDRY GHPTGDRVLV GLADTLRSII QPPALCGRLG GEEFAIVLPT NQLEEVISLA
EKISEEIRNL RCESELGLRM TASLSITLAR PGVNFDTLYL CGDDALYRAK HDGRNRIEVV
PHPLNPT
|
|---|
| |