| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1259 |
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| Symbol | |
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| ID | 8534413 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | - |
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| Start bp | 1361810 |
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| End bp | 1364023 |
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| Gene Length | 2214 bp |
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| Protein Length | 737 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 646383650 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_003263142 |
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| Protein GI | 261855859 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.708335 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACTTGT TTGTCTCTTC AGAGCCGCAG GATGCCCCTG ACTTAATGAC GCAGGTCAAA
CGAGGTGGAT TTGTCAGCGC AGTCTGGCTG ATGGTAGCCG CACTGACCGT CTTGTTGTTC
CCCTCGTTGG ATGCCGATGG GTTTTATGCC ATCTGGCCTG CCAATGCATT TGCTTTGGGT
TTTGTACTCA TGTGGGGCTA TGGTCTGCTC GTCCCGTTGG CGTTGACAGT TGCCGTCTGG
AACCTGTTCT TTATCGGGTT GACGCTGGTG CAGTCGCTGT TCGGCGCGAT CGCACTTGTA
TTGAGTCTGG CGCTTTTGCT GATGTTCCGA CGCTACATGC TGGCGACCAT CAGTAGCCCG
TACGGTCGTC GATTATTGGG CATTCCCACG GCTTCCCTCG TGATGGCCAG TTTGATTACT
GCGTTGGGAA TCTGGCAAAA CTCCGCATGG GTCGATGATT ACCAGACTAT TGGCCTGTTC
TGGTTTTCAC AATCCATTGC CTTTCTGGCA CTGACCCCGC TGGTCATGAG TTGTCTGCAT
GAAGGTTGCG GGCAAGCGTT TAATGAGTTG AAAGCTTGTT TCAGTCGACG TGTTTTTATT
GGTGTGTGGT TGTCCGTCGC CGTGTCAACT CTGGTCATCA TGGCTGCACT TCGACACTGG
GGCAATCTGG AGTTCAATGC AGGCAGCCTG CTTGGTTTGG TCGTTCTTGC GCTTGCAGCA
CATACCATGC CCATCCGGAT CGCCCGTTTT TCAATCGCTT TTTATATTCT GGTCTGGACC
TGGTTCAATG CGCACATCAA TTTGTTGCAT GGATACAATG CCTCTATGTT GCTGGGCGAT
CAGGCACTGA TTTTCATTGC GGCTCTGCTG GCGGTGATAT CCACCGAGAT GGTTCAAGCG
TACCGCCTGT CGGAGAAGTC GCTGGCCCGG CAGTTGTTGA TTGATCCATT GACCGGCTTG
CAAAACGACA TGGGGTTATC TCAACGGCTT CAAGCCTGGC CCAAAGATAG GACAGGTGCA
ATGCAACCGA TGATTGTCAT CGGCGTGCAT ATCCCCGAGC TTGAGCAGAT TGATGCCTTG
ATGGGGCATG AAGAAAGTAA TCAGGTCGAG TTGCGTTTGA GCCAGATTTT GAGAAAGGAA
AAGCTCTCTG ATTATGCCTC TCGTGTTCGT CCGGGGGTAT TCATTCTGTG TCTGACATCT
GCGGTTATGG GTATGCGCGG CGCCGATGTG GCTCAGAAAC TCAAGGATCG CATCGAGTTT
GAATGGAAAA AAATGGGCGC GGGCGCCCGT TATCTGCAGG CTGGTTTTAC GGTGTTCAAT
CTGGCTCAAA CGCGCGATTT GGGTTTGCTG ACTTCTGCGG TGCTTGCGGG GTGCCAATTG
TCTCTGGCTG ATCGGAATCA GTTGGTTCAT GTTGAAGACA ATCTGGACAG CCTGCTCAGT
CATCGAGTGC AGGAATTGAC CTGGGTGCAG CGCATGCGAG CCGCACTGGT CGGCGATACG
CAGGCGGGAC AGTTCATCCT GTTTGCTCAA ACCATTCGCG ATACTCGCCA TCCGGATGTC
AAGGCGTTCG AAGTGTTGTT GCGCTGGCAA GACGCTGATG AAAATGTGCT GCCACCCTCT
GAGTTCCTGC CGATTGCGGA GCGTTATGGA CTGATGACCG CGATCGATCT GTGGGTCATG
CGATCTGCGT TGGAGCAACT GGCCCAGTCC CCTTGGCGGG CTGAAATCAG CAAGGTGTCG
ATTAACTTAT CCGGTGCCAG TTTGGCTGAT CCCAATTTGA TTCACGAGAT AGAACAGCAA
CTTAAATCAT GCGGTTGCCG TGCGGAGCAG ATCTGTTTTG AGATCACCGA AACCATGGTG
ATTGCCGATA CAAAACTGGC CAGACAGGCC GTTCTTGGCA TCAAAGAACT CGGTTGCAAG
ATATCGCTGG ATGATTTCGG TACTGGCCTG TCGACCTTCT CCTACCTCAA GCGCTTTCCC
TTTGATTACC TCAAGATCGA TGGGGAGTTT GTGCGCCATA TTACCGAGTC CCGAATTGAT
CGGGCCATCG TCGAATCCAT TCAGGCCATC GCGTTTGAAA TGAACACGAT TACCGTTGCC
GAGTTCGTTG AGAACATCGA TCAGATGGAA ACACTAAGGC AAATCGGCGT TTACTATCAT
CAGGGTTACG GTGTGGCCAA ACCGGTACCC ATCGCGCATT TCCTGATTCC GTGA
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| Protein sequence | MNLFVSSEPQ DAPDLMTQVK RGGFVSAVWL MVAALTVLLF PSLDADGFYA IWPANAFALG
FVLMWGYGLL VPLALTVAVW NLFFIGLTLV QSLFGAIALV LSLALLLMFR RYMLATISSP
YGRRLLGIPT ASLVMASLIT ALGIWQNSAW VDDYQTIGLF WFSQSIAFLA LTPLVMSCLH
EGCGQAFNEL KACFSRRVFI GVWLSVAVST LVIMAALRHW GNLEFNAGSL LGLVVLALAA
HTMPIRIARF SIAFYILVWT WFNAHINLLH GYNASMLLGD QALIFIAALL AVISTEMVQA
YRLSEKSLAR QLLIDPLTGL QNDMGLSQRL QAWPKDRTGA MQPMIVIGVH IPELEQIDAL
MGHEESNQVE LRLSQILRKE KLSDYASRVR PGVFILCLTS AVMGMRGADV AQKLKDRIEF
EWKKMGAGAR YLQAGFTVFN LAQTRDLGLL TSAVLAGCQL SLADRNQLVH VEDNLDSLLS
HRVQELTWVQ RMRAALVGDT QAGQFILFAQ TIRDTRHPDV KAFEVLLRWQ DADENVLPPS
EFLPIAERYG LMTAIDLWVM RSALEQLAQS PWRAEISKVS INLSGASLAD PNLIHEIEQQ
LKSCGCRAEQ ICFEITETMV IADTKLARQA VLGIKELGCK ISLDDFGTGL STFSYLKRFP
FDYLKIDGEF VRHITESRID RAIVESIQAI AFEMNTITVA EFVENIDQME TLRQIGVYYH
QGYGVAKPVP IAHFLIP
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