| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1236 |
|---|
| Symbol | |
|---|
| ID | 8534390 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | - |
|---|
| Start bp | 1338734 |
|---|
| End bp | 1340080 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 646383627 |
|---|
| Product | nucleotide sugar dehydrogenase |
|---|
| Protein accession | YP_003263119 |
|---|
| Protein GI | 261855836 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1004] Predicted UDP-glucose 6-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR03026] nucleotide sugar dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.038693 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATTA CGATTTTTGG CACAGGATAT GTGGGGCTGG TTACGGGCGC GTGTCTGGCG
GAAGTTGGGC ACAACGTTCT GTGTGCCGAT GTCGACGAAA GCAAGATCGA GCGCTTGAAG
CAGGGAATTA TCCCGATTTT TGAGCCGGGG CTCGAAACCA TTGTTCGGGA TAATTTCAAT
CAGGGGCGTC TGAATTTCAC CACCAATGCG CGTGAGGCGG TCGAATTTGG TGATGTGCAG
TTCATCGCCG TCGGCACCCC GCCGGATGAA GATGGTTCTG CTGATTTGCA ATATGTTCGT
GCAGTGGCAC GTTCGATCGG CGAGGCGATG ACCTCGACAA AAATTGTCGT CAACAAATCC
ACAGTCCCAG TCGGAACAGG CGATAAAGTC CAGGCGGAGA TCAGTACGGC GCTGGCCGAA
CGCGGGTTAT CTATCGAATT CGACGTCGTA TCGAATCCTG AGTTTCTCAA GGAAGGTGCA
GCGGTTAATG ACTTCATGAA ACCTGACCGG ATCATCATCG GCACAACAAA CCCCGCGAGT
GAAAAGCGGA TGCGCGAACT GTACGCCCCG TTCAATCGCA ACCATGATCG AATGATCGTG
ATGGATTTAC GCTCGGCCGA ACTGACAAAA TATGCGGCGA ATGCGATGCT GGCCACCAAG
ATCAGCTTCA TGAACGAGCT GGCTAATCTC GCTGAACGCC TGGGTGCCGA CATCGAACAG
GTGCGGATCG GCATCGGTTC TGATCCACGT ATCGGCTACC ACTTTATCTA TCCCGGCTGC
GGTTATGGTG GCTCATGCTT TCCCAAGGAT GTTCAGGCGC TGCACCGCAC CGCCCGTGAC
GTTGGCTACA ACGCCAAACT TCTGGCAGCG GTGGAGTCGG TCAATGATCG GCAGAAAGTC
AAATTGTTCG ATCTGATCGT GCGCCATTAC GGTGGCCAAG ATGCACTGGC TGGTAAAACC
TTTGCTTTAT GGGGCTTGGC ATTCAAGCCA AACACCGATG ACATGCGCGC CGCGCCATCT
CGCGAGGTGA TGGCCGCTTT GTGGGGGGCT GGCGCCAAAG TTCAAGCCTT TGATCCGGAA
GCCATGGAAG AAACCCAGCG AATCTACGGT CAACGAGATG ATCTGCTTTT GTGTGGAACA
CGTGATTCAG CATTGAAAGG GGCCGACGCC CTGATTGTCT GCACAGAATG GAAGGCGTTC
CGTGCGCCGG ATTTCGCTTT GATGGCCAGT GCGCTTAAGG AAAAGCTGAT TTTCGATGGA
CGCAATGTCT ATGATCCTAA TCGATTGGCC GAAGATAATT GGCTTTACTA CGGCATTGGT
CGTGGCTTGA GTATTTCAGT GCGCTGA
|
|---|
| Protein sequence | MKITIFGTGY VGLVTGACLA EVGHNVLCAD VDESKIERLK QGIIPIFEPG LETIVRDNFN
QGRLNFTTNA REAVEFGDVQ FIAVGTPPDE DGSADLQYVR AVARSIGEAM TSTKIVVNKS
TVPVGTGDKV QAEISTALAE RGLSIEFDVV SNPEFLKEGA AVNDFMKPDR IIIGTTNPAS
EKRMRELYAP FNRNHDRMIV MDLRSAELTK YAANAMLATK ISFMNELANL AERLGADIEQ
VRIGIGSDPR IGYHFIYPGC GYGGSCFPKD VQALHRTARD VGYNAKLLAA VESVNDRQKV
KLFDLIVRHY GGQDALAGKT FALWGLAFKP NTDDMRAAPS REVMAALWGA GAKVQAFDPE
AMEETQRIYG QRDDLLLCGT RDSALKGADA LIVCTEWKAF RAPDFALMAS ALKEKLIFDG
RNVYDPNRLA EDNWLYYGIG RGLSISVR
|
|---|
| |