| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1165 |
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| Symbol | |
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| ID | 8534317 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 1269257 |
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| End bp | 1270981 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 646383554 |
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| Product | Tetratricopeptide TPR_2 repeat protein |
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| Protein accession | YP_003263048 |
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| Protein GI | 261855765 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.96712 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTCTG CCGATGCGCC AAAACCATCG AATGCGGTTA CGAATATTCC CCTGCCGTCG
TCCGCTCAGG AGCAGGCTCG ATTAAAAGAA ATTGACCGGA ATCCGGTTTT TTTGATCATG
GCCGGTGAGT TGGCAGGTCA GGCAAACAAT CTGCCTCAAT CTGCCGATTA TTATTATGAG
GCGGCTGAGC AAACAGATGA ATTATCCGTT ATTCGACGAG CAAGCCAGAT CGCCTTGATC
GCCAAAAAGT ACGACTTGGC GCAAAGCATG GCTAAACGCT GGATAGCCCT GGAGCCCAAG
TCCATCAAGG CTGCGGCCAC CTTGACAGTC TCTGCGATCC AACTTGGCGA TATTCCAGCG
GCAGATGAGG CACTGGAAAA CTGGCTTAAG CAGATCAATC ACGATGATCC AGCCGTTTTT
AACGAGCTTG GCGCCTATCT TGAAAACAAC GTGGCCAGAG ATAAAGCAAT CACCTATATC
GATCATCTGG CAAAACGCTA CCCGAATAAT TTCACCGCCC AGATCGTGGT TGCCAAACTC
GACCTTAAAT TCGACCGTTT GGAAACGGCG ACCAATGCCG CCAGTCGTGC CGTTGAAATA
GCGCCGAATA GCCAAACCGC ACGCGACATC CTCATCGTTG CGCTGAGTCA GTCCGGCAAC
AACAAAGCGC TTTTGAAGGC ATTGAAATCA GCGCACAAAC GCTTTCCGGG TACGCCGCGC
TATCTTTCTG GTTTGATCGA GTCAACCATT CGCGAAGGCA ATCAAATTGA GGCGGGCAAG
CTCATTGTTA CGGCTCTTGG AAAACCACAA GATGATCCGA CCCAATTACG TAATCTGGCT
GTGCTGTCTC TTCAGATCAA CCGGCCAGCA CTTGCAAAAA AAGCTTTGCT TAAACTGAAT
CAACTACCCG ATCAACATGA TCTTGCCCAA CTGCTGCTCG GCCGCCTCGC CGCGCAGTCT
GATGACTTCC AACAAGCCAT CCGTCACTTC AACAACGTAG CGATAAACAG CGAACACTAT
GCCCAAGCGC GAATTCTAAT GGCAGCCGCG TACGCTCAAT CTGACGACAT GACCGGTGCG
CTGCAGAGTC TGGATATTGC CCTGAGCCGT CCTATTGACG AGGCCGACAA GCAGCGTCTT
ACTCTGGCAA AAGCAGGTTT GCTGCAATCT CAAGGGCTTG ATCACGAAGC ACTAACCACG
CTCAACGAAG CGGTCACGAT TTGGCCCAAC GCCCACGATC TTCAGTTGCA GCGCGCCATG
ATTCTGTTGA AATTCAACCG AAGCATTGAG GCGGAAGAAG TCCTTCGGCA AGTCATAAAA
GAAGATCCGG AGAATGCGAC AGCACTCAAT GCGCTGGGTT ACACGCTTGC CGATGAAAAC
CGCGACCTGA ACGAAGCAGA AAAAATGATT CGAAAGGCAC TGGCAAGTGA TCCTGAAAAT
GCGGCCTACC TTGATAGTCT CGGCTGGGTG CAATATCGAT TGGGACAATT CGAGGAGGCA
GAGAAGACGC TCCAACAGGC ATACAAACTT GTCCCCGACC CTGAAGTTGG CGCGCATTGG
GGTACCGTGC TTTGGCACCT TGATAAACAC GAAGAGGCCA AAGCAGTCTG GAAACGCGCA
CTACTGCTAC GCGGTGATCA CCCTGTACTG ACGCAAACGC TACAGAAATA CGCCCCAGAC
CTCATGAACG ACACAGAGAC ACCGCAGAAT CAAAATCAAC CATGA
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| Protein sequence | MTSADAPKPS NAVTNIPLPS SAQEQARLKE IDRNPVFLIM AGELAGQANN LPQSADYYYE
AAEQTDELSV IRRASQIALI AKKYDLAQSM AKRWIALEPK SIKAAATLTV SAIQLGDIPA
ADEALENWLK QINHDDPAVF NELGAYLENN VARDKAITYI DHLAKRYPNN FTAQIVVAKL
DLKFDRLETA TNAASRAVEI APNSQTARDI LIVALSQSGN NKALLKALKS AHKRFPGTPR
YLSGLIESTI REGNQIEAGK LIVTALGKPQ DDPTQLRNLA VLSLQINRPA LAKKALLKLN
QLPDQHDLAQ LLLGRLAAQS DDFQQAIRHF NNVAINSEHY AQARILMAAA YAQSDDMTGA
LQSLDIALSR PIDEADKQRL TLAKAGLLQS QGLDHEALTT LNEAVTIWPN AHDLQLQRAM
ILLKFNRSIE AEEVLRQVIK EDPENATALN ALGYTLADEN RDLNEAEKMI RKALASDPEN
AAYLDSLGWV QYRLGQFEEA EKTLQQAYKL VPDPEVGAHW GTVLWHLDKH EEAKAVWKRA
LLLRGDHPVL TQTLQKYAPD LMNDTETPQN QNQP
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