| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1141 |
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| Symbol | |
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| ID | 8534289 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 1240805 |
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| End bp | 1242103 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 646383526 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_003263024 |
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| Protein GI | 261855741 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00630975 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATTCAG ATCGGTCTGA TATTACCGTT CAATCAGAAG GAAAACCTGC AATTGAGCGC
GGTTTGTTCG ATGCGATCCC TGATGCAATC TATCTAATTG ATCCGGTCAC CTCGAACATT
CTGGATTGCA ACCTGCATGC ATACGAAGAC CTCTATCTAA CTCGGGAACA AGTGCTCAAT
CACTCTGTTT TGTCACTCCA GATGGATGTG CGCGGTTTGC CCGCATGGAC AGAAATTGCC
GATGTCATAC GGCAAAACCG TGTATACCGT TTTCAAGGTC ATCATCGCCG CGCGGACGGC
TCGTCGCTTC CGGTTGAGGT CAATACAGAG GCAGTTGTAT ATCAGGGGCG GGAATGGTTT
ATTTCCGTGG CAAGAGATAT CAGCAAACGG CATTCTGGCA GTCTGAATGG GCAGGATTGG
TCAGTACTGT ACGACCTGGC CGATGGTGTC TGGGATTGGC ATGTATCCGA TGATTCACTG
TATTTCAGCC CAAATCTCAA ACGCTTTCTC GGTTATGGAC CAGACGAGAT GGAACCGGTT
CTTTCCACCT GGAAGGACAA CGTACATCCC GATGATCTTC CCATCGTTTT CGGTGCACTC
GAGGAGCATT TGACCGGCCG CAGAAGCCAA TTTGTCGCCA CCTACCGCTT GCGTAACCGA
AATGGTTTCT ACTTGTGGGT AGAGGATCAC GGGGTCGTCA CCGACTTTCT TCCCAGCGGC
GAACCGGCAC GCGTTGTCGG CTTTATCAAC GATGTAACAG ACTATAAAAC GATCGAAGTC
ACGCTTCAAA AGGAAGCAGA AAGAGACTCT TTGACCGGGC TCTTTAATCG TCGGCGAGGA
ATGGAGCTTT TGATTGAGAC ATTCAACAAG ACGGTAAAGC GGCAACCTAA CGCCAAGGTA
GAACTGTCTT TGCTGGTTAT TGATTTGGAC TTTTTCAAAC GAATCAATGA CCGGTACGGC
CACCTAGAAG GAGATGAAGT TCTTCGAATA ACCGGTTCGC TTATACTCAA ATCACTCCCC
GATGATGCCG TGGCCTTTCG ATGGGGTGGA GAAGAGTTCC TTGTTGCCTT GCCGGGAACC
GCTCTGGCAG AAGCCAGAGA AAGGGCCGAG AATATTCGCC AAGCATTTGT GAACCAGGAA
TGGCAACCAG GTATTGAAGG GGAGTGTGTC ACTGTGAGTA TTGGCATCGC GCACTATCCA
GAAGAGGCAA CCCATTTACT CGAATTGATC GCCGCAGCAG ATAAGGCGGT TTATCTTGCT
AAGCGCCTAG GCAGGAATCG CGTCGAATCT CACATCTAG
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| Protein sequence | MYSDRSDITV QSEGKPAIER GLFDAIPDAI YLIDPVTSNI LDCNLHAYED LYLTREQVLN
HSVLSLQMDV RGLPAWTEIA DVIRQNRVYR FQGHHRRADG SSLPVEVNTE AVVYQGREWF
ISVARDISKR HSGSLNGQDW SVLYDLADGV WDWHVSDDSL YFSPNLKRFL GYGPDEMEPV
LSTWKDNVHP DDLPIVFGAL EEHLTGRRSQ FVATYRLRNR NGFYLWVEDH GVVTDFLPSG
EPARVVGFIN DVTDYKTIEV TLQKEAERDS LTGLFNRRRG MELLIETFNK TVKRQPNAKV
ELSLLVIDLD FFKRINDRYG HLEGDEVLRI TGSLILKSLP DDAVAFRWGG EEFLVALPGT
ALAEARERAE NIRQAFVNQE WQPGIEGECV TVSIGIAHYP EEATHLLELI AAADKAVYLA
KRLGRNRVES HI
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