Gene Hneap_0563 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHneap_0563 
Symbol 
ID8533698 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothiobacillus neapolitanus c2 
KingdomBacteria 
Replicon accessionNC_013422 
Strand
Start bp597323 
End bp600874 
Gene Length3552 bp 
Protein Length1183 aa 
Translation table11 
GC content56% 
IMG OID646382952 
Productexodeoxyribonuclease V, gamma subunit 
Protein accessionYP_003262464 
Protein GI261855181 
COG category[L] Replication, recombination and repair 
COG ID[COG1330] Exonuclease V gamma subunit 
TIGRFAM ID[TIGR01450] exodeoxyribonuclease V, gamma subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.480964 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCCCGA CCACACCCAT CACGGATGAG ATTACCCCCG GTTTCCTGCT GATTCAGGGC 
AACCGGCTGG AGCTGTTGCA GCAGGTTCTG ATCGACTGGC TCAAAAGGCA TCCGCTGGCC
CCGCTGGAGA ACGAAACCTT TCTGGTACAG AGCAACGGCA TGGCTCAATG GCTGCGCCTT
GGTTTGGCAC GCCCGCGCTC GGCCCAAGAT GGTGGATTGG GCATAGCGAC CGGCATCGAA
ATGATTCTGC CTGCCCGCTT GCAGTGGCAA TGTTATCGAG CGGTACTGGG TACCGACTTC
GTCCCCGCCG AAGCACCGCT GGATAAGGAC AAGCTGGTAT GGCGCCTGAT GCGGTTACTG
CCGAATCTCA TCCATACGCC CTCCTTCCTG CCGTTGCGCC ACTACATAGT CACCGATCAG
CGGCCCGACG ACCGTCGCCT GTATCAATTG GCACTGCGCG TTGCCGATCA GTTCGACCAG
TATCAGGTGT ACCGAGCGGA TTGGCTGCGC CATTGGCAGG AAGGCCATGA TGACCTCCCC
GCGCACGAAA CGCGCCTACC GGACGAACAA CGCTGGCAGC CGCCGCTGTG GCGCGCATTG
CTGGCAGACA TTCGCGAACG GCAGGACGAT CGAGACGGCA TCGAATTCGC GGCAGGACGC
GCAGACCTGC ACACCGCCTT TCGAAAAGCC GCATCGGAGC AAAAGGCGCG CCCGGAAGGC
CTGCCCCGGC GGATTGTCGT GTTTGGACTG TCGTCGATTG CGCCTCAGGT TTTGGACGTT
CTGGCAGTCG CATCGCGTTG GTCACAGGTG ATTGTCTGCT TTCTGAATCC CTGTGAATAT
TATTGGGGCG ATATCATCGA CGGACACCAG TTGTTCGCAC AACGCTATCA AGGCCGAAGA
CCCTACAAAT CCGCGCCAAA CGAAACAGCA CATGCACATC CCTTGCTGGC CGCCTGGGGC
CGACAGGGGC GCGATCTGAT GCGCCTGCTG GATCAATTCG AGGAAAATGC TCAGCTCGCC
GCCAATCCAT TGACACTCAC GCCCTTCGAA TCAACGGTTG TCGACTCTGC AAAATCCTCG
CTGCTGACGC TCATTCAAGA TGACATCCTC AAGCTGCGCA CCCCAGATGA ACTGCGCGCA
CTAAACCGTC GCCTTGAGCC CGACCAAGAT CACTCGCTGC ATTTCCACAT TGCGCACAGC
CCATTGCGAG AGGTCGAGAT TCTGCACGAC CAGTTACTCG CTGCATTCGA AGCCGATACG
TCGCTCAAAC CGACGGACAT CATCGTGATG GTGCCGGACA TGAGCCTATA CGCTCCGGCC
ATTTCCGCCA TTTTCGGGCG CTTTGGCCGC GATGATCCGC AACACATACC GTTCAGCATT
TCCGATCAAG CAGCTTCGGG TCAGGTCGCT CTGATCAATG CACTCGAACA GATACTGAAC
TTGCCGACAT CACGTCTGCT GAGAAGCGAG CTGCTTGATC TGCTGGGCAG CCCCCTGCTT
CTTGCCCGAT TCGGAATTTC AGAAACGGAT TTAACCACCC TGCATGACTG GATCGATTCG
GCAGGTATTC GCTGGGGGCT AAATGCCCAG CATCGTGAAG CGTTTGGCGT GCCACCGGGC
ATGGAGCAAA ACACCTGGGC ATTCGGGCTG AATCGGCTCC TGCTCGGCTA TTTGAGTGGC
GACGAAAACG CGATTTGGGA TGAAATAGAA CCCCATCCCG TCATGGATGG CATCAGCGCG
GAACTGGTCG GCAAACTGGC ACAATTGGTC CAGCAACTCG ACAAGTACAC CCAACGCCTG
TCTGAAAAAT GCACACCAAC GGAATGGGTT GCGCGCTTAC GCCGACTGAT GACCGATTTT
TTCTCTCTTT CCGATACTCA AAATCATCTG GACTCACCCG AAATCCAGAT TGAAATGGAT
ACGCTGGCGC GTTTGCACAA TGAGCTCGAA CGGTGGCTCG CCGACTGCAG CGTGGCTGGG
TTCGAAAATG AAATCGACAT CGAAACCGTT CGTCATGCCT GGCTCAATCG CCTTGAACCA
CATCGCCTGC ATCAACGGTT CATTGTCGGC GGCGTTAACT TTGCCACCCT GATGCCGATG
CGCGCCATTC CCTATCGACA CATCTACCTT CTAGGCATGG ACGACGCGAA CTACCCACGG
CGTCAAACAC CCAACGATTT CGATCTCATG AACGGCCGCT ACCGCCCGGG TGATCGCGCA
CGGCGCGAGG ACGACCGATA CCTATTCCTC GAAGCCTTGC TGGCCGCTCG GGAACGGTTA
TCCATCAGCT GGGTCGGCCG CAACATCAAC AACAACAAGA TTCGCCCGGC TTCCGTGCTC
GTCAGCCAGC TGCGCGACTA TCTCGATCAA TTCTGGGCAG TGCCAGAGCC ACATTCCTGC
AGCGAGATTC AGACCACAGA GCACCCGCTG CACCCATTCA GCCGCCGTTA TTTTTCGGCA
GACAATACTG ATCTGTTCAC CTTCGCCAAC GACTGGCGAG CCGTGCACGA CAGCACTCAA
GGCACTTCAA AGACCGAGCT ACCAATCTGG CTCCCCAAAG AACCCCTCAC CCTGAATACT
TTAAGCGATT TCCTGCGCAC GCCCGCGCAC ACGCTGCTCA CAAAACGGTT TGGCGTCTAT
CTAAGACCCA CCGCGACCGA ACTGGAAGAT CACGAACCCT TCGAATTGGA TGGCCTGCAA
CGTTGGCAAC TCAAAAAAGA GATCAACGAC CGTGTGCGTC ACCAACTCGC CATACAAGCG
CACGCTACAA GCCAAATGAC GACGCCCACA ATCGAACACA TCAGCGCGCT CATCTCGACA
CAATATGGTC AGGCACGCCT CGGTGGGCGA TTACCCATTG TCAGCCCCGC ATTCGAGTAC
AGCGAACTTC TGCCGTTGAT CGACCAATGG CAACGCTGGC TTGAATTAAA CCTGCGATTC
CATCAAACCG CAGCTAAATC ACCGGTACTG AGCATCCGAA GTGATCGAGG TATCATGCTT
GAAGCATCAG TACCAGATGT ATATTCCACC GAGTCATCAA TCCCGAACGA CACCCTGGCG
CGACTGATTT TCATTGAAGG CAAACTCCAT CGAGGTCAGG ATATCGAATG GCACAAATGC
GTTGCCCAGT GGCCGGCTCA TCTGCTCGCC CAGCTCACGC ACGGATCAGT GGAAACCTAT
CTCATCGGCG AAACTGGCAC CTTGTGCTTC ACCCCCATTG AAAAAGAGAT GGCAAAACAG
CATCTATTGA CCTTGCTCGA CGCCTGGTTT GATGCCGTGC AGGCCCCCTA TCCGCTGGCC
TGCAAAACTG CGTTCTGCTT GCTGGCTCAA GAAATGACTC CGGAAAATAC AGATTCCGCG
CTCAAAAAAG CCAGAGAATG CTTTGAGGGC AACATGAAAG TTCCGGGAGA AGTCACGAAC
AGCCCAGCAC TCGCCCGGCT CTGGCCGGAC TTTTCGACGC TCATCAACGG CCAAAGCTTT
GCCAAAAAAC AATTTACCGA ATTGAGCCAG ATCATCTACG CGCCCATCAA AGATGCCATC
GAAGCCCGTT AG
 
Protein sequence
MPPTTPITDE ITPGFLLIQG NRLELLQQVL IDWLKRHPLA PLENETFLVQ SNGMAQWLRL 
GLARPRSAQD GGLGIATGIE MILPARLQWQ CYRAVLGTDF VPAEAPLDKD KLVWRLMRLL
PNLIHTPSFL PLRHYIVTDQ RPDDRRLYQL ALRVADQFDQ YQVYRADWLR HWQEGHDDLP
AHETRLPDEQ RWQPPLWRAL LADIRERQDD RDGIEFAAGR ADLHTAFRKA ASEQKARPEG
LPRRIVVFGL SSIAPQVLDV LAVASRWSQV IVCFLNPCEY YWGDIIDGHQ LFAQRYQGRR
PYKSAPNETA HAHPLLAAWG RQGRDLMRLL DQFEENAQLA ANPLTLTPFE STVVDSAKSS
LLTLIQDDIL KLRTPDELRA LNRRLEPDQD HSLHFHIAHS PLREVEILHD QLLAAFEADT
SLKPTDIIVM VPDMSLYAPA ISAIFGRFGR DDPQHIPFSI SDQAASGQVA LINALEQILN
LPTSRLLRSE LLDLLGSPLL LARFGISETD LTTLHDWIDS AGIRWGLNAQ HREAFGVPPG
MEQNTWAFGL NRLLLGYLSG DENAIWDEIE PHPVMDGISA ELVGKLAQLV QQLDKYTQRL
SEKCTPTEWV ARLRRLMTDF FSLSDTQNHL DSPEIQIEMD TLARLHNELE RWLADCSVAG
FENEIDIETV RHAWLNRLEP HRLHQRFIVG GVNFATLMPM RAIPYRHIYL LGMDDANYPR
RQTPNDFDLM NGRYRPGDRA RREDDRYLFL EALLAARERL SISWVGRNIN NNKIRPASVL
VSQLRDYLDQ FWAVPEPHSC SEIQTTEHPL HPFSRRYFSA DNTDLFTFAN DWRAVHDSTQ
GTSKTELPIW LPKEPLTLNT LSDFLRTPAH TLLTKRFGVY LRPTATELED HEPFELDGLQ
RWQLKKEIND RVRHQLAIQA HATSQMTTPT IEHISALIST QYGQARLGGR LPIVSPAFEY
SELLPLIDQW QRWLELNLRF HQTAAKSPVL SIRSDRGIML EASVPDVYST ESSIPNDTLA
RLIFIEGKLH RGQDIEWHKC VAQWPAHLLA QLTHGSVETY LIGETGTLCF TPIEKEMAKQ
HLLTLLDAWF DAVQAPYPLA CKTAFCLLAQ EMTPENTDSA LKKARECFEG NMKVPGEVTN
SPALARLWPD FSTLINGQSF AKKQFTELSQ IIYAPIKDAI EAR