Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hneap_0563 |
Symbol | |
ID | 8533698 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halothiobacillus neapolitanus c2 |
Kingdom | Bacteria |
Replicon accession | NC_013422 |
Strand | - |
Start bp | 597323 |
End bp | 600874 |
Gene Length | 3552 bp |
Protein Length | 1183 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 646382952 |
Product | exodeoxyribonuclease V, gamma subunit |
Protein accession | YP_003262464 |
Protein GI | 261855181 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1330] Exonuclease V gamma subunit |
TIGRFAM ID | [TIGR01450] exodeoxyribonuclease V, gamma subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.480964 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCCCGA CCACACCCAT CACGGATGAG ATTACCCCCG GTTTCCTGCT GATTCAGGGC AACCGGCTGG AGCTGTTGCA GCAGGTTCTG ATCGACTGGC TCAAAAGGCA TCCGCTGGCC CCGCTGGAGA ACGAAACCTT TCTGGTACAG AGCAACGGCA TGGCTCAATG GCTGCGCCTT GGTTTGGCAC GCCCGCGCTC GGCCCAAGAT GGTGGATTGG GCATAGCGAC CGGCATCGAA ATGATTCTGC CTGCCCGCTT GCAGTGGCAA TGTTATCGAG CGGTACTGGG TACCGACTTC GTCCCCGCCG AAGCACCGCT GGATAAGGAC AAGCTGGTAT GGCGCCTGAT GCGGTTACTG CCGAATCTCA TCCATACGCC CTCCTTCCTG CCGTTGCGCC ACTACATAGT CACCGATCAG CGGCCCGACG ACCGTCGCCT GTATCAATTG GCACTGCGCG TTGCCGATCA GTTCGACCAG TATCAGGTGT ACCGAGCGGA TTGGCTGCGC CATTGGCAGG AAGGCCATGA TGACCTCCCC GCGCACGAAA CGCGCCTACC GGACGAACAA CGCTGGCAGC CGCCGCTGTG GCGCGCATTG CTGGCAGACA TTCGCGAACG GCAGGACGAT CGAGACGGCA TCGAATTCGC GGCAGGACGC GCAGACCTGC ACACCGCCTT TCGAAAAGCC GCATCGGAGC AAAAGGCGCG CCCGGAAGGC CTGCCCCGGC GGATTGTCGT GTTTGGACTG TCGTCGATTG CGCCTCAGGT TTTGGACGTT CTGGCAGTCG CATCGCGTTG GTCACAGGTG ATTGTCTGCT TTCTGAATCC CTGTGAATAT TATTGGGGCG ATATCATCGA CGGACACCAG TTGTTCGCAC AACGCTATCA AGGCCGAAGA CCCTACAAAT CCGCGCCAAA CGAAACAGCA CATGCACATC CCTTGCTGGC CGCCTGGGGC CGACAGGGGC GCGATCTGAT GCGCCTGCTG GATCAATTCG AGGAAAATGC TCAGCTCGCC GCCAATCCAT TGACACTCAC GCCCTTCGAA TCAACGGTTG TCGACTCTGC AAAATCCTCG CTGCTGACGC TCATTCAAGA TGACATCCTC AAGCTGCGCA CCCCAGATGA ACTGCGCGCA CTAAACCGTC GCCTTGAGCC CGACCAAGAT CACTCGCTGC ATTTCCACAT TGCGCACAGC CCATTGCGAG AGGTCGAGAT TCTGCACGAC CAGTTACTCG CTGCATTCGA AGCCGATACG TCGCTCAAAC CGACGGACAT CATCGTGATG GTGCCGGACA TGAGCCTATA CGCTCCGGCC ATTTCCGCCA TTTTCGGGCG CTTTGGCCGC GATGATCCGC AACACATACC GTTCAGCATT TCCGATCAAG CAGCTTCGGG TCAGGTCGCT CTGATCAATG CACTCGAACA GATACTGAAC TTGCCGACAT CACGTCTGCT GAGAAGCGAG CTGCTTGATC TGCTGGGCAG CCCCCTGCTT CTTGCCCGAT TCGGAATTTC AGAAACGGAT TTAACCACCC TGCATGACTG GATCGATTCG GCAGGTATTC GCTGGGGGCT AAATGCCCAG CATCGTGAAG CGTTTGGCGT GCCACCGGGC ATGGAGCAAA ACACCTGGGC ATTCGGGCTG AATCGGCTCC TGCTCGGCTA TTTGAGTGGC GACGAAAACG CGATTTGGGA TGAAATAGAA CCCCATCCCG TCATGGATGG CATCAGCGCG GAACTGGTCG GCAAACTGGC ACAATTGGTC CAGCAACTCG ACAAGTACAC CCAACGCCTG TCTGAAAAAT GCACACCAAC GGAATGGGTT GCGCGCTTAC GCCGACTGAT GACCGATTTT TTCTCTCTTT CCGATACTCA AAATCATCTG GACTCACCCG AAATCCAGAT TGAAATGGAT ACGCTGGCGC GTTTGCACAA TGAGCTCGAA CGGTGGCTCG CCGACTGCAG CGTGGCTGGG TTCGAAAATG AAATCGACAT CGAAACCGTT CGTCATGCCT GGCTCAATCG CCTTGAACCA CATCGCCTGC ATCAACGGTT CATTGTCGGC GGCGTTAACT TTGCCACCCT GATGCCGATG CGCGCCATTC CCTATCGACA CATCTACCTT CTAGGCATGG ACGACGCGAA CTACCCACGG CGTCAAACAC CCAACGATTT CGATCTCATG AACGGCCGCT ACCGCCCGGG TGATCGCGCA CGGCGCGAGG ACGACCGATA CCTATTCCTC GAAGCCTTGC TGGCCGCTCG GGAACGGTTA TCCATCAGCT GGGTCGGCCG CAACATCAAC AACAACAAGA TTCGCCCGGC TTCCGTGCTC GTCAGCCAGC TGCGCGACTA TCTCGATCAA TTCTGGGCAG TGCCAGAGCC ACATTCCTGC AGCGAGATTC AGACCACAGA GCACCCGCTG CACCCATTCA GCCGCCGTTA TTTTTCGGCA GACAATACTG ATCTGTTCAC CTTCGCCAAC GACTGGCGAG CCGTGCACGA CAGCACTCAA GGCACTTCAA AGACCGAGCT ACCAATCTGG CTCCCCAAAG AACCCCTCAC CCTGAATACT TTAAGCGATT TCCTGCGCAC GCCCGCGCAC ACGCTGCTCA CAAAACGGTT TGGCGTCTAT CTAAGACCCA CCGCGACCGA ACTGGAAGAT CACGAACCCT TCGAATTGGA TGGCCTGCAA CGTTGGCAAC TCAAAAAAGA GATCAACGAC CGTGTGCGTC ACCAACTCGC CATACAAGCG CACGCTACAA GCCAAATGAC GACGCCCACA ATCGAACACA TCAGCGCGCT CATCTCGACA CAATATGGTC AGGCACGCCT CGGTGGGCGA TTACCCATTG TCAGCCCCGC ATTCGAGTAC AGCGAACTTC TGCCGTTGAT CGACCAATGG CAACGCTGGC TTGAATTAAA CCTGCGATTC CATCAAACCG CAGCTAAATC ACCGGTACTG AGCATCCGAA GTGATCGAGG TATCATGCTT GAAGCATCAG TACCAGATGT ATATTCCACC GAGTCATCAA TCCCGAACGA CACCCTGGCG CGACTGATTT TCATTGAAGG CAAACTCCAT CGAGGTCAGG ATATCGAATG GCACAAATGC GTTGCCCAGT GGCCGGCTCA TCTGCTCGCC CAGCTCACGC ACGGATCAGT GGAAACCTAT CTCATCGGCG AAACTGGCAC CTTGTGCTTC ACCCCCATTG AAAAAGAGAT GGCAAAACAG CATCTATTGA CCTTGCTCGA CGCCTGGTTT GATGCCGTGC AGGCCCCCTA TCCGCTGGCC TGCAAAACTG CGTTCTGCTT GCTGGCTCAA GAAATGACTC CGGAAAATAC AGATTCCGCG CTCAAAAAAG CCAGAGAATG CTTTGAGGGC AACATGAAAG TTCCGGGAGA AGTCACGAAC AGCCCAGCAC TCGCCCGGCT CTGGCCGGAC TTTTCGACGC TCATCAACGG CCAAAGCTTT GCCAAAAAAC AATTTACCGA ATTGAGCCAG ATCATCTACG CGCCCATCAA AGATGCCATC GAAGCCCGTT AG
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Protein sequence | MPPTTPITDE ITPGFLLIQG NRLELLQQVL IDWLKRHPLA PLENETFLVQ SNGMAQWLRL GLARPRSAQD GGLGIATGIE MILPARLQWQ CYRAVLGTDF VPAEAPLDKD KLVWRLMRLL PNLIHTPSFL PLRHYIVTDQ RPDDRRLYQL ALRVADQFDQ YQVYRADWLR HWQEGHDDLP AHETRLPDEQ RWQPPLWRAL LADIRERQDD RDGIEFAAGR ADLHTAFRKA ASEQKARPEG LPRRIVVFGL SSIAPQVLDV LAVASRWSQV IVCFLNPCEY YWGDIIDGHQ LFAQRYQGRR PYKSAPNETA HAHPLLAAWG RQGRDLMRLL DQFEENAQLA ANPLTLTPFE STVVDSAKSS LLTLIQDDIL KLRTPDELRA LNRRLEPDQD HSLHFHIAHS PLREVEILHD QLLAAFEADT SLKPTDIIVM VPDMSLYAPA ISAIFGRFGR DDPQHIPFSI SDQAASGQVA LINALEQILN LPTSRLLRSE LLDLLGSPLL LARFGISETD LTTLHDWIDS AGIRWGLNAQ HREAFGVPPG MEQNTWAFGL NRLLLGYLSG DENAIWDEIE PHPVMDGISA ELVGKLAQLV QQLDKYTQRL SEKCTPTEWV ARLRRLMTDF FSLSDTQNHL DSPEIQIEMD TLARLHNELE RWLADCSVAG FENEIDIETV RHAWLNRLEP HRLHQRFIVG GVNFATLMPM RAIPYRHIYL LGMDDANYPR RQTPNDFDLM NGRYRPGDRA RREDDRYLFL EALLAARERL SISWVGRNIN NNKIRPASVL VSQLRDYLDQ FWAVPEPHSC SEIQTTEHPL HPFSRRYFSA DNTDLFTFAN DWRAVHDSTQ GTSKTELPIW LPKEPLTLNT LSDFLRTPAH TLLTKRFGVY LRPTATELED HEPFELDGLQ RWQLKKEIND RVRHQLAIQA HATSQMTTPT IEHISALIST QYGQARLGGR LPIVSPAFEY SELLPLIDQW QRWLELNLRF HQTAAKSPVL SIRSDRGIML EASVPDVYST ESSIPNDTLA RLIFIEGKLH RGQDIEWHKC VAQWPAHLLA QLTHGSVETY LIGETGTLCF TPIEKEMAKQ HLLTLLDAWF DAVQAPYPLA CKTAFCLLAQ EMTPENTDSA LKKARECFEG NMKVPGEVTN SPALARLWPD FSTLINGQSF AKKQFTELSQ IIYAPIKDAI EAR
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