| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_0521 |
|---|
| Symbol | |
|---|
| ID | 8533648 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | - |
|---|
| Start bp | 557967 |
|---|
| End bp | 559820 |
|---|
| Gene Length | 1854 bp |
|---|
| Protein Length | 617 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 646382902 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_003262422 |
|---|
| Protein GI | 261855139 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | [TIGR01779] TonB-dependent vitamin B12 receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACAAAT TCCCCATGTC CGGTCGTCAC CGTACAGGCC GCACCACACT GGCCTGCGCA
TACCTGACCG CTTGTTCCTT TCCCTTGTCA GCACTGGCCG GTTCGCCCTC TACCCTACCG
GATCTAAATA TCACCGCCAG TCACGGTGCA CCGGTCGCGT TTGCGGGTGT ACCCGAAACG
GTCATCACTC GTGCAGAAAT TGAGCGGTTG CAAGCCACTT CGGTTTTGTC TTTGCTTGAA
AACCGGGCGG GGATCAACAT GGTCAACCAA GGCGGGCCAG GCAAGATAAC GACCGCATCG
ATCTGGGGCA TGAGCGGCAG TCAAACACTT GTGCTCATCG ATGGCGTGCG GATAGGTTCG
CTTACGGCGG GCGCGGCGTA TCTTGAAAAT CTGCCAGTCG CCCTGATCGA TCATATCGAC
ATCATCAAGG GACCGCGTTC GGGGCAATAC GGCGCGGATG CCATGGGTGG CGTGATCCAG
ATTTTTACGC GCAAGGGCAA AAAAGGTATT CAACCTTCAT TTAGCATCGC CGGTGGCAGC
AACAAAACTT TCGAGACCTC GGCCAATGTC AGCGGCGGTA ATGGCCCGTT CGATTACTCG
ATCGGTGCAT CGCACCAAGG AACTGGCGGG TTCAACGCCT ACACCGATAC CACCGGCTCA
CCCTTCGCGG TCAATCAACC GGATAACGAC GGTTATCGCA ATAATTCAGC CAGCGGTCGC
CTCAACTACA CCGGAGACAA CGGCGCACGC CTCGGTGTTC ACTGGCTCGG TACAAACGCA
TTCACCGATT ATGACGGCAG CAGCTTTGCA GGTAATCAGC AACGATCCCG GCAGCAGAAT
TTCGGGCTGG ATGGCGCATT GATGAAAATC GGCATCTGGC AGCTGCGGGC CAGTGCTGGG
CGCAATATCG AACGCCAGAC CCAATACTAT GACGGTAAAT ACGTTTCCGA ATATAACAGT
CGGCAAGATT CGTTCAGCCT CGCCAACGAT TTTAGTATCG GCCAGGGTTT ATTGACACTG
GGTGCGGACC GCCTGAACGA TCACGTATCC AGCAGCGTGA ATTATGATGT GACCAGCCGT
CATAACAATG GCGTTTTTGC CCAATACGCG ACGCAGATAG CCGATTTATC CATCCAGACG
GCGCTTAGGC ATGACAGCAA CAGTCAGTTT GGCTCGGCCA ATACCGGCTC GGTCGATTTA
AGCTGGCAAC TCAATCCATC TTTGGCGTTG ACCGGTGGTT ATGGCACCGG CTTTCATGTG
CCGAGTTTCA ACTTTCTTTA CTATCCGGGC GGCTATGCCA ACCCGGATCT TAGACCAGAA
CACTCGCGTA CCGCCCGACT GGGCTTCAAC TGGCAGAACA ACAACGGCTG GACATCCAGC
CTGACGGCAT TCCGTACCCG AACCCGCGAC CTGATTGCAT CCAGCGCAAG CACGAACTTT
GTGCCTTACA ACATCAATCA GGCGCAATCG ATCGGCGCGG AATGGCAACT GGGATGGCAC
AATGCCGATT GGGCCTTGAA TAGCAGCGCC ACTTGGATAT CAGCCGTCGA TCGGGAAACC
GGTGTCAGTA TTCCTCGTCA ACCAAAATGG AGCGGTCGGG TTGATGTGGA TCGAAAGCTC
GGCGCTTGGC GCATGGGGGT GACCGTTCGA GGGCAGACGG CAACACATGA ATCCACGTTT
AGCCAAATCA ATAACGGCTT CGCCACAGCA GATCTGCGAC TGAGCTACGC CTATAGTCAA
AACTGGCACA TTGAGGCGAA ACTGAGCAAC GTTCTGGACA AACAATACCA AACTGCCTAC
GACTACCATC AGGCCGGACG CACCGTGTTA TTTACGCTGC GCTACGGGTT GTAA
|
|---|
| Protein sequence | MYKFPMSGRH RTGRTTLACA YLTACSFPLS ALAGSPSTLP DLNITASHGA PVAFAGVPET
VITRAEIERL QATSVLSLLE NRAGINMVNQ GGPGKITTAS IWGMSGSQTL VLIDGVRIGS
LTAGAAYLEN LPVALIDHID IIKGPRSGQY GADAMGGVIQ IFTRKGKKGI QPSFSIAGGS
NKTFETSANV SGGNGPFDYS IGASHQGTGG FNAYTDTTGS PFAVNQPDND GYRNNSASGR
LNYTGDNGAR LGVHWLGTNA FTDYDGSSFA GNQQRSRQQN FGLDGALMKI GIWQLRASAG
RNIERQTQYY DGKYVSEYNS RQDSFSLAND FSIGQGLLTL GADRLNDHVS SSVNYDVTSR
HNNGVFAQYA TQIADLSIQT ALRHDSNSQF GSANTGSVDL SWQLNPSLAL TGGYGTGFHV
PSFNFLYYPG GYANPDLRPE HSRTARLGFN WQNNNGWTSS LTAFRTRTRD LIASSASTNF
VPYNINQAQS IGAEWQLGWH NADWALNSSA TWISAVDRET GVSIPRQPKW SGRVDVDRKL
GAWRMGVTVR GQTATHESTF SQINNGFATA DLRLSYAYSQ NWHIEAKLSN VLDKQYQTAY
DYHQAGRTVL FTLRYGL
|
|---|
| |