Gene Hneap_0498 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHneap_0498 
Symbol 
ID8533625 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothiobacillus neapolitanus c2 
KingdomBacteria 
Replicon accessionNC_013422 
Strand
Start bp531017 
End bp532501 
Gene Length1485 bp 
Protein Length494 aa 
Translation table11 
GC content55% 
IMG OID646382880 
Producttype I secretion outer membrane protein, TolC family 
Protein accessionYP_003262400 
Protein GI261855117 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAGTC ACCCTCAATC CCAGCGGTTG AAACAAACCG TACTGGCAAT GCTTATGGTC 
GTCGGTGCGT ACGGCACGCC CGCTCTTTCA GCCAACCTGA TGGAAATCGT GACACTCGCG
GAACAGAACG ATCAAACGCT GCTTGCCGCC CAGCAGAAAC GGTTGTCCAT TCAGGAAAAC
ACCCCCATTG CACGATCAAA CCTGCTTCCG CAAATTGGCG CCAGTGCGGG TTTGGATTAC
AAACGAACCG AGATCAAATC AAACGGCATT CCCAATGCAC CTACCGTGAT TGAAGGCAGT
GGCCGCACCT TGGGATTAAG CCTGAACCAG GTCATTTACA ACCGGATCGA TAACCTCAAT
CTCGGCATTG CCGATCTTCA GGCCAAGCAA GCCGATCTCG ACTTTGCAGC CGCCCAGCAA
GATCTGCTTT TGCGTGCCAG CACGGCCTAC TTCGCCGTGC TGCAAGCCAA TGCCAGCCTA
CAACTGGCTA TTGCCAGTCA AACAGCATTC AAAAACCAAT TGGCTCAAGC GCAAAAACGC
TACGAAGTCG GTTTGGTCGC CGTAACCGAT GTCGCCAATG CGCAAGCCAA TTACGACAAG
GCCAATGCCG ACATCATCAC CGCTCGAAAT GCGCTTGAGA ATGCTCAATC CGCCTTGGCG
ACCATCACCG GCAAAGAGCC CACCGAGCTC GACGATGTGC GGACAAACCT TTCGACGCCT
CGCCCGGATC CGGCGAATTC CAATGATTGG GTCACGCTGG CAGCCAAGCA GAACATTTCG
CTCCAAAGCG CCCAAATCGG TGGCCAGATC AGCCAGGAAA ATATCGCCAT CAACCGCGCA
GCACGCATGC CCACGGTCGA TCTGACCGGG CAATACGGCT ACAACAGCAC ACCCAGCCAG
TTCAATGGCA GTGAATCCAG CAACGTTGCT GCCAGCATTG GGTTGCAGGT CTCCGTGCCG
CTCTATAACG GCGGTCGGAT CAATGCCAAG TCACGCCAGG CTGCCTACCA ATATCAGCAG
GCCCAGAACG AGATCGAAAA CCTGCGCCGT ACCGTGCAAC AGGGCACGGC CAACGATTAT
CGCGGCGTAA TCACCAGCAT CAGCGAAATC ACCGCGTACG GACAATCGGT CGAGTCTGCC
CGCACCAGCT TGGCGGCGAC TGAAGCCGGT TATCAGGTTG GAACCCGCAC CATCGTTGAT
GTGCTCAATG CGCAGATTCA AGTGTTCAGT GCCATGGCAA ACTTCCTGAA CGCCCGCTAC
AGCTACCTCA CGAACTACCT GAAACTCAAA GGCGATACCG GTCAGCTTTC ACTCGATGAC
ATCAAAGCCG TCAATGCCCA GCTTGTGCCG GGCAAAATCA ACGCCTTAAT TGCACCACTA
ATGAACAGCG GGAACGAAAG CTCAAAATCG CAACAGCAAA TGATCGAGCG CGTCATCCAA
CGTGCGGCGA AAACGGTCGA GTCCAAAGCG GCAGATCAAC ACTAA
 
Protein sequence
MKSHPQSQRL KQTVLAMLMV VGAYGTPALS ANLMEIVTLA EQNDQTLLAA QQKRLSIQEN 
TPIARSNLLP QIGASAGLDY KRTEIKSNGI PNAPTVIEGS GRTLGLSLNQ VIYNRIDNLN
LGIADLQAKQ ADLDFAAAQQ DLLLRASTAY FAVLQANASL QLAIASQTAF KNQLAQAQKR
YEVGLVAVTD VANAQANYDK ANADIITARN ALENAQSALA TITGKEPTEL DDVRTNLSTP
RPDPANSNDW VTLAAKQNIS LQSAQIGGQI SQENIAINRA ARMPTVDLTG QYGYNSTPSQ
FNGSESSNVA ASIGLQVSVP LYNGGRINAK SRQAAYQYQQ AQNEIENLRR TVQQGTANDY
RGVITSISEI TAYGQSVESA RTSLAATEAG YQVGTRTIVD VLNAQIQVFS AMANFLNARY
SYLTNYLKLK GDTGQLSLDD IKAVNAQLVP GKINALIAPL MNSGNESSKS QQQMIERVIQ
RAAKTVESKA ADQH