Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hneap_0498 |
Symbol | |
ID | 8533625 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halothiobacillus neapolitanus c2 |
Kingdom | Bacteria |
Replicon accession | NC_013422 |
Strand | - |
Start bp | 531017 |
End bp | 532501 |
Gene Length | 1485 bp |
Protein Length | 494 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 646382880 |
Product | type I secretion outer membrane protein, TolC family |
Protein accession | YP_003262400 |
Protein GI | 261855117 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGAGTC ACCCTCAATC CCAGCGGTTG AAACAAACCG TACTGGCAAT GCTTATGGTC GTCGGTGCGT ACGGCACGCC CGCTCTTTCA GCCAACCTGA TGGAAATCGT GACACTCGCG GAACAGAACG ATCAAACGCT GCTTGCCGCC CAGCAGAAAC GGTTGTCCAT TCAGGAAAAC ACCCCCATTG CACGATCAAA CCTGCTTCCG CAAATTGGCG CCAGTGCGGG TTTGGATTAC AAACGAACCG AGATCAAATC AAACGGCATT CCCAATGCAC CTACCGTGAT TGAAGGCAGT GGCCGCACCT TGGGATTAAG CCTGAACCAG GTCATTTACA ACCGGATCGA TAACCTCAAT CTCGGCATTG CCGATCTTCA GGCCAAGCAA GCCGATCTCG ACTTTGCAGC CGCCCAGCAA GATCTGCTTT TGCGTGCCAG CACGGCCTAC TTCGCCGTGC TGCAAGCCAA TGCCAGCCTA CAACTGGCTA TTGCCAGTCA AACAGCATTC AAAAACCAAT TGGCTCAAGC GCAAAAACGC TACGAAGTCG GTTTGGTCGC CGTAACCGAT GTCGCCAATG CGCAAGCCAA TTACGACAAG GCCAATGCCG ACATCATCAC CGCTCGAAAT GCGCTTGAGA ATGCTCAATC CGCCTTGGCG ACCATCACCG GCAAAGAGCC CACCGAGCTC GACGATGTGC GGACAAACCT TTCGACGCCT CGCCCGGATC CGGCGAATTC CAATGATTGG GTCACGCTGG CAGCCAAGCA GAACATTTCG CTCCAAAGCG CCCAAATCGG TGGCCAGATC AGCCAGGAAA ATATCGCCAT CAACCGCGCA GCACGCATGC CCACGGTCGA TCTGACCGGG CAATACGGCT ACAACAGCAC ACCCAGCCAG TTCAATGGCA GTGAATCCAG CAACGTTGCT GCCAGCATTG GGTTGCAGGT CTCCGTGCCG CTCTATAACG GCGGTCGGAT CAATGCCAAG TCACGCCAGG CTGCCTACCA ATATCAGCAG GCCCAGAACG AGATCGAAAA CCTGCGCCGT ACCGTGCAAC AGGGCACGGC CAACGATTAT CGCGGCGTAA TCACCAGCAT CAGCGAAATC ACCGCGTACG GACAATCGGT CGAGTCTGCC CGCACCAGCT TGGCGGCGAC TGAAGCCGGT TATCAGGTTG GAACCCGCAC CATCGTTGAT GTGCTCAATG CGCAGATTCA AGTGTTCAGT GCCATGGCAA ACTTCCTGAA CGCCCGCTAC AGCTACCTCA CGAACTACCT GAAACTCAAA GGCGATACCG GTCAGCTTTC ACTCGATGAC ATCAAAGCCG TCAATGCCCA GCTTGTGCCG GGCAAAATCA ACGCCTTAAT TGCACCACTA ATGAACAGCG GGAACGAAAG CTCAAAATCG CAACAGCAAA TGATCGAGCG CGTCATCCAA CGTGCGGCGA AAACGGTCGA GTCCAAAGCG GCAGATCAAC ACTAA
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Protein sequence | MKSHPQSQRL KQTVLAMLMV VGAYGTPALS ANLMEIVTLA EQNDQTLLAA QQKRLSIQEN TPIARSNLLP QIGASAGLDY KRTEIKSNGI PNAPTVIEGS GRTLGLSLNQ VIYNRIDNLN LGIADLQAKQ ADLDFAAAQQ DLLLRASTAY FAVLQANASL QLAIASQTAF KNQLAQAQKR YEVGLVAVTD VANAQANYDK ANADIITARN ALENAQSALA TITGKEPTEL DDVRTNLSTP RPDPANSNDW VTLAAKQNIS LQSAQIGGQI SQENIAINRA ARMPTVDLTG QYGYNSTPSQ FNGSESSNVA ASIGLQVSVP LYNGGRINAK SRQAAYQYQQ AQNEIENLRR TVQQGTANDY RGVITSISEI TAYGQSVESA RTSLAATEAG YQVGTRTIVD VLNAQIQVFS AMANFLNARY SYLTNYLKLK GDTGQLSLDD IKAVNAQLVP GKINALIAPL MNSGNESSKS QQQMIERVIQ RAAKTVESKA ADQH
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