| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_0485 |
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| Symbol | |
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| ID | 8533612 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 512390 |
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| End bp | 515425 |
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| Gene Length | 3036 bp |
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| Protein Length | 1011 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 646382867 |
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| Product | diguanylate cyclase with PAS/PAC and GAF sensors |
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| Protein accession | YP_003262387 |
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| Protein GI | 261855104 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAGCC CTGCAGACAC TTTTCTCGAT CTGTCCACAT CCGTTCTGCG GGACCTTGTG
GCTGGCCAGT CGCCGAAGGA TCTTGCTGCG CGTATTTGTC TTCGGATAGA GCAGATGCGC
CCGGGAAGAA TCGCCAGCGT CATGTGGGCG GGCGACGGCG ACGAAAGGCT GCACGTGTTT
GCCGCACCCA GCGCGCCTCA GGGGCTTATT GATCAGCTCG ATGGCTTGAC GCCCGGTGCG
CATGCCGGTT CATGTGGCAG CGCGGCTCAT TCCGGAGTAC CCGCCTTGGT GTCCGATATC
GAAACGGACA GTCGTTGGGA TGATTTGCGC CCGCTGGCGC AGCAATGGCA TCTTCGTTCC
TGCTGGTCTT TACCTCTGTT CCATAATGAT CGGTTGCTGG GCACCTTTGC CTTGTCCGGG
ATGGTTTCGG ATGTGCCTAC GGATGACGAT ATCCTGCTGC TTCAGTTTGC GGCGACGCTT
GTCAGTGCCC TGTTGCATCA CGAGTATCAG ATGATGCAAC GCCAGCGGTT GACCGATCAG
AAAAGCCGCT TGATCGATTT CAATCACATG TTGGCGAAGG TAAACCAGAA GATCGTTTCG
GTCGAGAGTG AGCGAGAACT GTTGCAACCG CTCTGTGATC TTGCCGTGCG CTACGCCCAT
CTGAAGCTGG TTTTGCTCGC TCGCCCCGAT GAAACCCTCC GATTCCGCTT TCTGGCCGCC
TCAGGGGCGA CCGGCTATAC CGACGGTTTG TACATTTCAG CCGACCCCGA TTTGCCGGAA
GGGCAGGGTA CGATGGGTCG AACCTGGCGT TCGGAGCAAG CCTATTTCAA TACTTCTTTC
GAACATTCCG AGTTTTTGCA GCCGTGGCAA TCGAGGGCGC GTCAATTCGG GTTGAAGGCA
ACCGCCACAT TGCCTGTTTT ACGCGGCGGT AAAATGTTCG CCGTGCTGGC CGTTTATCAC
GCAGAACCCG ATGTCTTTGA TGGGCCATTG CAGGATGTAC TTCGAGAACT GGCTTTGAGC
ATATCGCGTG GGCTGGATCG GCTGGATGCC CGGAAGCTGC AAAACGCTCT GTTCAACAAC
GCGTTTGTTG GTGTATTTCT GGTGCAGGGT CGAGTGATCA AAAGCTGTAA TCCCCAGGCA
GCGCACATGT TCGGTTACAG CCTTGACGAC ATGGTGGGGA TGCCGGTTCG GGATTTTTTT
GCCAGCGATA TTGAATATGC CCGTCTAGAC AAAGCCTTTT CCAAAATGAG CAAATCGCAG
GTCGTGCAAC GGCAATCGAT GGTTTGTGTG CGTCGGGACA GGAAATTGTT GCAATGTGAT
GTCTCGGGTC GAATGTTTAT CGATAACGAG GGCGAACATA GCGTTTGGAC TGTTCTGGAT
GCGACCGAGC GTGAGACGCA GGCACAACGT TTGCACCGTA TTGCCGGTTT CCGGGAGCTA
TTATCAGAGC TCAATCAGTT CAGTGCCGAT CCGGCCAACA TGCAGCAAGT CAAAGACCAT
GATTTGTACG ACTTTGTCTG CCAAGTCCTG AGTCAGAACA ATGCGCTGAA ACTGGTCTGG
ATCGGTTCGC CGCTGCCAGG TGGCGGCGGT TTTGATGTTC TTGCATCCTC GGGCGAGCTG
AATTGGCATT CGGATTGTCT CCCCATGCAG AGTGAGCAGC CGTTGTCTTC CGGAAAATTG
ATGAGAGAGC ATACGGCTCA GCGCTGCTGG CACGAAAATC AAACCATACT CCTCACATAC
GAGATCCCTT CGACAGATGG TCGAGGGGGG CAAAGTGTTG CGCGAAGTAC CGTTTCCTTG
CCGATTCATA TAGATGGCAC ACTGACGGCG GTGCTTACGA TATGCGGTCA CAGTGAAGAC
ATCCTCGATC AGGACGCTAT TTCATTTTTT GATAACCTCG TGCTGAATAT CGAGCGTGGT
TTGCAGAACA TCCGGCAGCG CAACCAGATC ATGCGCCTGC AAGGCTTGTA TCGTGCGCTC
ATGCAGCAGG CAGACGTTGT GCTGCGCGCG CAAACAGTGC CCGATATGCT CTTTGGCACC
TGCGAAAAAC TGGTACAAGA AACCCCTTTT AATGCCATCT ACTTGAGAAA GCCAAATGCC
GATGGCGTCA TGGATGTCCT CGCTTCTACC GGTAGTGGCG CCGCAGCGTT GCAAAATGTC
ATCTCAGTGG TGGCCGAGGA TGCACGAGAT CAGCTTATCG TGCGCGCATG GCTGACCCAG
AAAACAGCCA TTGAAAATGA TTTGTTGGGT AACGCGCGCC TCGCGGAATA CCATCCGTTT
CTCAGAGCGC ATCGGTGGCA TTCAGCATTG GTCACGCCCG TAAGACGCGG CGGAGAGCTA
TGGTCGGTTA TGGGCTTTGT CTGTGAAGAT CATGACGTCT TCGATCCTCA AACCGTCGAG
CTGTGTGAAC GGGTAGCCGA ACTGTTGGGG CGTGGTTTGG ATGAATTGGA CAACAAACAG
CGTCTCGTTT CACTTCAGTC CGAAGAGGCT TATCGCGCCC GACATGATCG CCTGACCGAT
CTGCCCAACC GCTTCGCCCT GGAGCAATAT TTACCTCAAG CGCTTGCACG GTCTAAAAAG
AATGGTCGGA TGCTGGCGCT TGGGATGATG GATCTGGATG ATTTCAAACC AGTCAACGAT
CAGTTCGGGC ATGAAACGGG TGATCGCCTT TTAAGAGAGC TGGCGGGGCG CTTGCGTGCA
CGTCTGCGCG CGCAAGATTT CCTGGTGCGT CTGGGTGGGG ATGAATTCGT CGTCGTGATC
GGCGATATCG ATCCGGATCA TGCCATAGCC CATCTGCAAT TGGCGCTCAG CCGTCTGCAC
GAAGCGGTTG AAGAAGGTTT TGAAGAAGGT TTTGAAGTAG CCCCGGATCG GTTCGCAACC
GTTGGTTTGT CCGGTGGGTT CGCCCTATAC CCGAAGGACG GTGAGGATGG CGACACCCTG
CTGCGCAAGG CCGACGCCAC CATGTATCAG TCTAAAACGC GGAAAAATAC CCGAGCGCAG
TGGTGGCAGT TGTTCGATCA GGAAGGCATT GTTTGA
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| Protein sequence | MTSPADTFLD LSTSVLRDLV AGQSPKDLAA RICLRIEQMR PGRIASVMWA GDGDERLHVF
AAPSAPQGLI DQLDGLTPGA HAGSCGSAAH SGVPALVSDI ETDSRWDDLR PLAQQWHLRS
CWSLPLFHND RLLGTFALSG MVSDVPTDDD ILLLQFAATL VSALLHHEYQ MMQRQRLTDQ
KSRLIDFNHM LAKVNQKIVS VESERELLQP LCDLAVRYAH LKLVLLARPD ETLRFRFLAA
SGATGYTDGL YISADPDLPE GQGTMGRTWR SEQAYFNTSF EHSEFLQPWQ SRARQFGLKA
TATLPVLRGG KMFAVLAVYH AEPDVFDGPL QDVLRELALS ISRGLDRLDA RKLQNALFNN
AFVGVFLVQG RVIKSCNPQA AHMFGYSLDD MVGMPVRDFF ASDIEYARLD KAFSKMSKSQ
VVQRQSMVCV RRDRKLLQCD VSGRMFIDNE GEHSVWTVLD ATERETQAQR LHRIAGFREL
LSELNQFSAD PANMQQVKDH DLYDFVCQVL SQNNALKLVW IGSPLPGGGG FDVLASSGEL
NWHSDCLPMQ SEQPLSSGKL MREHTAQRCW HENQTILLTY EIPSTDGRGG QSVARSTVSL
PIHIDGTLTA VLTICGHSED ILDQDAISFF DNLVLNIERG LQNIRQRNQI MRLQGLYRAL
MQQADVVLRA QTVPDMLFGT CEKLVQETPF NAIYLRKPNA DGVMDVLAST GSGAAALQNV
ISVVAEDARD QLIVRAWLTQ KTAIENDLLG NARLAEYHPF LRAHRWHSAL VTPVRRGGEL
WSVMGFVCED HDVFDPQTVE LCERVAELLG RGLDELDNKQ RLVSLQSEEA YRARHDRLTD
LPNRFALEQY LPQALARSKK NGRMLALGMM DLDDFKPVND QFGHETGDRL LRELAGRLRA
RLRAQDFLVR LGGDEFVVVI GDIDPDHAIA HLQLALSRLH EAVEEGFEEG FEVAPDRFAT
VGLSGGFALY PKDGEDGDTL LRKADATMYQ SKTRKNTRAQ WWQLFDQEGI V
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