| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_0433 |
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| Symbol | |
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| ID | 8533555 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 454266 |
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| End bp | 456038 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 646382812 |
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| Product | flagellar M-ring protein FliF |
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| Protein accession | YP_003262337 |
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| Protein GI | 261855054 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.186559 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACAGA ATTCGATGGC TCCCCTGTCT GCCGCTCACC AGCCGGCAAC AGGAACACCG
GCATGGATAC GGCAAATCGA TGGATTTACG CAATCGTCGA GTTTCCGACA GTTGCTTATT
CTGGTGGCGT TGGCGGCGAC GCTTTCATTC ATGGTCGGGT TCTTCCTGTG GGGGCAGAAG
CCATCGCTGG TACCGCTGTA TACCAACCTC GGACCGAAAG AATCGGCCGC CGTCGTCGAA
GCGTTGCGTG CGGCCAAAAA GAATTATCAA CTCAGTGCGG ATGGCGCCAT TCTGGTTGAT
CCGGCTCAAT TGCCAGCGGT GAGAATGCTG TTGGCCGGAG AGGGTTTGCC TTCCGGTAAC
GGGGTCGGGC TTGAGATGCT TGATAAAGAT CAATCCTTGG GCACCAGCCA GTTTGTTGAG
CAGGCACGTT ACCAGCACGC CATTGAAATC GAACTGGCTC GATCAATCGA GACCATTCAG
GGTGTTTCGG CAGCTCGTGT GCATCTGGCA ACGCCCAAGC AATCCGTTTT TGTTCGAGAA
CAGCAAAAGC CCACGGCTTC GGTCGTGGTG GAGTTGTCGC CCGGGCAATC GCTGACTGCC
GATCAGGTGC GCGCGATCGT GCATCTGGTC GCATCGAGCG TGGCCGGGAT GAAACCGGAG
AACGTGAGCG TCATTGATCA GCGCGGCGAA CTGTTAAGTC AAAATTCTGA CGATGCCAGC
GGCATGGGAT TGACCGATAA ACAATTCGCC TATCGTCAGC GCGTCGAGCG AGCCTACGCA
CGCCAGATCG AAGCCTTGCT GACACCGATT GTGGGGGCAA ATCAGGTGCG CGCCCAGGTT
TCTGCCGATA TCGATTTCTC ACGTCAGGAA GGCACAAGCG AAACCTATGG CCCGAAAACA
GGGGTCGTAC TTTCCGAGCA GACCAACGAC ACCACGCGCG CGCTGGGTGA TCAGGGTATC
AATGGTGGTG TGCCGGGTGC CCTGTCCAAT CAGCCACCGG GCGGCGGTAC GGTAACCCCG
CAAACGTCGG GCGGCTTGCA GCCACCGGCC AATCTTGATG TTCAGCAATA CCAGCAGATC
ATTCAGACAC CGATCAGCAC CCAAAAGAAC GAAACACGCA ACTACAATGT GGATAAGGAT
ATTCGCCATA CCCAATACGC CAGCGGTGCG GTGGATAAAC TCAACGTGGC GGTGTTGCTG
GATGAAAAAA CCGTAACGGA CAAAGACGGG AAGACGAAAA CCGAGCCGAT GAGTGATGCC
GAATTGGCTC GAATCAAGGA TCTGGTGTCA CAAGCCGTGG GCCTGGATGA ACAGCGTGGC
GATAAATTGA CGCTCGCAAG CATCCCGTTC GTTGAGCAGA AGATTGAAAA AGTCTCCGTT
CCGCTGTGGC AGCAGGAATG GTTCATGCCC TTGCTGAAAA ACCTGGGGCT GGGCGTGGCG
ATGCTGCTGA TCTTCCTTAT GGTGGTTCGC CCCCTGCTGA AAATGCTGGC GGACAAGTCC
CGCCCAGAGG CATTGCCTCA CCAGCCAGGT GCAGCGCTGC CTAATGGCAC GGAAGACAAT
GGCATGAATG AGGAGGGGGT TTCCTTCACC CGACAGGCGA GTGAGGGCGG ACAAATCCCC
GGGCCGGATG ACGAGGACAA CCTCGAAGGG GTGCCACAAC TCGTCGGTGC CGCCAGCTAT
GCTGATAAGC TGCGACAATT GAAACAAAGT ATCAATCATG ATCCCAAGGC AGTCGCTGCG
GTGATCAAAC AATGGACGCA TTCGGAGAAC TAA
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| Protein sequence | MAQNSMAPLS AAHQPATGTP AWIRQIDGFT QSSSFRQLLI LVALAATLSF MVGFFLWGQK
PSLVPLYTNL GPKESAAVVE ALRAAKKNYQ LSADGAILVD PAQLPAVRML LAGEGLPSGN
GVGLEMLDKD QSLGTSQFVE QARYQHAIEI ELARSIETIQ GVSAARVHLA TPKQSVFVRE
QQKPTASVVV ELSPGQSLTA DQVRAIVHLV ASSVAGMKPE NVSVIDQRGE LLSQNSDDAS
GMGLTDKQFA YRQRVERAYA RQIEALLTPI VGANQVRAQV SADIDFSRQE GTSETYGPKT
GVVLSEQTND TTRALGDQGI NGGVPGALSN QPPGGGTVTP QTSGGLQPPA NLDVQQYQQI
IQTPISTQKN ETRNYNVDKD IRHTQYASGA VDKLNVAVLL DEKTVTDKDG KTKTEPMSDA
ELARIKDLVS QAVGLDEQRG DKLTLASIPF VEQKIEKVSV PLWQQEWFMP LLKNLGLGVA
MLLIFLMVVR PLLKMLADKS RPEALPHQPG AALPNGTEDN GMNEEGVSFT RQASEGGQIP
GPDDEDNLEG VPQLVGAASY ADKLRQLKQS INHDPKAVAA VIKQWTHSEN
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