| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_0351 |
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| Symbol | |
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| ID | 8533471 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 353784 |
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| End bp | 356195 |
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| Gene Length | 2412 bp |
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| Protein Length | 803 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 646382734 |
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| Product | ribonuclease R |
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| Protein accession | YP_003262261 |
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| Protein GI | 261854978 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCAAG AGACGGTATC AGATCCCCAA GCAGCCCAAG AGGCTGAAAA ATACGACAAC
CCGGTGGCGA GCCGGGAATT CATTTTGCAG TTGCTCTCGG AGCAAGATGG CCCTTTGACG
CTGAATCGAT TGATCAGTCA CCTAGAATAC GATGGTGATG ACGAACGGAT CGAAGGCTTG
AGCCGCCGCA TGCGTGCGAT GGAGCGTGAT GGCCAGGTCA TCCGCAATCG TCGCGGCGGC
TACGTGCCGG TCACTCATGC CGAACTGGTG CGTGGTCGCG TGCTGGGTCA TCGTGATGGC
TTCGGATTTC TCGTGCCCGA TGATGGCGGC GACGATGTGT TTCTCTCGCC CCGCGTGATG
CGCGCGCTGC TCAATGGCGA TCGTGCGGTC GTGCAGGTGA CCGGGCTTGA TCGCCGTGGA
CGTCGTGAAG GGAATCTGGT CGAAGTAATT GAGCGGGCCA ATGCCGAGAT TGTCGGCCGA
TTGGTGCTGG AGGCGGGCAT TGCTTTTGTG GTTCCCGATC ATGCGCGGAT CACTCAGGAT
ATTCTCGTCC CGATGACCGA TCTGATGGGC GCGCGCGATG GTCAGATCGT GCGAGTTGCA
TTGGTCGAAC AGCCCACACT GCGCCACAAG CCCGTCGGCA AGGTTGTTGA GGTGTTGGGT
GATCACATGT CGCCAGGCAT GGAGATCGAT GTCGCCATTA ACTCCCACGG TATTCCGCAC
GAGTGGCCGG AAGAAGTTCT GGCTGCCATT GATGGTTTGA ATCCCGAAGT TGAGGAGAGC
CACAAGTCAG GGCGAGTCGA CTTGCGCTCT ATGCCACTTG TCACCATTGA TGGCGCCGAC
TCCAAGGATT TCGACGATGC GGTGTTCTGC CAGGCCGCGC CGGAGGGTTT CCGGTTGCTG
GTGGCGATCG CCGATGTCAG TCATTACGTG AATGTGGGCT CTGCCTTGGA TCGTGAGGGT
TTCAATCGTG CGACGTCCGT GTACTTCCCC GGGCGCGTGC TCCCCATGCT TCCGGAGGTG
CTATCAAACG GTTTGTGTTC GTTGAACCCG GCTGTTGATC GCTTGTGCCT CTGCGCCGAT
ATGCTGATCA ATAATGAAGG GCATATCGCC AAATTCCGCT TCTTCGAAGG GGTGATGAAG
TCTGCTGCGC GTCTGACCTA CGATACGGTT GCCAAAGTGC TGGTCGATCA GGATGCTGAG
GCGCGCGCGG CACACGCCCA TCTGCTCGAA CCTCTTGAAA CGCTCCATGG CGTATACAAG
GTGTTGCGAT CAGCGCGTGA ACGTCGCGGC GCGATCGATT TTGATACCGT CGAAACCAAG
ATCGTCTTCG GCGAAGGCCG CAAGATCGAG GCGATCGTGC CCTACGAGCG CAACGATGCG
CACAAGATCA TCGAAGAATG CATGATCGCT GCAAACGTTG CAGCCGGACG CTTTGTTGCC
GATCACAAAA TTCCCGCACT GTACCGTGTA CATGATCGCC CCACGGCGGA AAAAATTACC
GATCTGCGTG CCATGCTGGC CGAAAAGGGC TTGAGCTTGG GTGGCGGTGA TCAACCAAGC
CCCAAAGACT TCAATGCCTT GCTGTCTCAG GTGCAGGGTC GTGCGGATTT TCTGACGATT
CAGACCATGA TTCTTCGTTC CTTGAAACAG GCGGTGTACT CACCGGACAA TCTGGGGCAC
TTTGGTCTGG CGCATGAGTT CTATGCGCAC TTCACCTCCC CGATCCGGCG ATATCCCGAT
TTAATGGTGC ACCGCGCCAT TCGCCACCTG CTTCGTACGG GTGCCCCGGA CCGTTTTCCA
TACAATCATG ATGAAATGGT CATCATCGGT GAGCATTGTT CCAATAACGA ACGCCGTGCA
GATGAAGCGA CGCGGGATGC GACGGATTGG CTCAAGTGCG AGTTCATGCT CGACAAGGTG
GGCGAGGTGT TCGAAGGTCG AGTGGCCTCT GTTCTGGGTT TCGGCCTATT CGTCGAACTC
AAGGATTTCT TCGTCGAAGG CTTGTTGCAC ATCACCGCCC TGACCAAGGA CTACTACCAT
TTCGATCCGG TGACGCTCTC GTTGCGGGGC GAACGTTCGG GGCGGGTTTA TGCCTTGAAC
GACGCCATCA CCGTGCGTGT GGCTCGGGTC GACCTGGATG AGCGCAAAAT CGATTTTGTC
CTGCCGGATG ACGATGAAGC CTTGTCTGAA TCGAGTGGCG ATGCACGGAG TGAGCCTCGG
GACGATCAGG AATCCGATGA AGATGACGCA GCGAAGAAGA AACGCAAACC GCGCCGCCGC
CGTCGTAAAA AGCCCGCCGG TGATGCACCT GCGGGTGACG ATGATGAAAA CGCCGATTCA
GATGATGACG GGTCGGATAC CTCGTCTGCT CCCGAGTCTG AGCCCGGTGA TGCCGAGGAA
TCGCGCAAAT AA
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| Protein sequence | MSQETVSDPQ AAQEAEKYDN PVASREFILQ LLSEQDGPLT LNRLISHLEY DGDDERIEGL
SRRMRAMERD GQVIRNRRGG YVPVTHAELV RGRVLGHRDG FGFLVPDDGG DDVFLSPRVM
RALLNGDRAV VQVTGLDRRG RREGNLVEVI ERANAEIVGR LVLEAGIAFV VPDHARITQD
ILVPMTDLMG ARDGQIVRVA LVEQPTLRHK PVGKVVEVLG DHMSPGMEID VAINSHGIPH
EWPEEVLAAI DGLNPEVEES HKSGRVDLRS MPLVTIDGAD SKDFDDAVFC QAAPEGFRLL
VAIADVSHYV NVGSALDREG FNRATSVYFP GRVLPMLPEV LSNGLCSLNP AVDRLCLCAD
MLINNEGHIA KFRFFEGVMK SAARLTYDTV AKVLVDQDAE ARAAHAHLLE PLETLHGVYK
VLRSARERRG AIDFDTVETK IVFGEGRKIE AIVPYERNDA HKIIEECMIA ANVAAGRFVA
DHKIPALYRV HDRPTAEKIT DLRAMLAEKG LSLGGGDQPS PKDFNALLSQ VQGRADFLTI
QTMILRSLKQ AVYSPDNLGH FGLAHEFYAH FTSPIRRYPD LMVHRAIRHL LRTGAPDRFP
YNHDEMVIIG EHCSNNERRA DEATRDATDW LKCEFMLDKV GEVFEGRVAS VLGFGLFVEL
KDFFVEGLLH ITALTKDYYH FDPVTLSLRG ERSGRVYALN DAITVRVARV DLDERKIDFV
LPDDDEALSE SSGDARSEPR DDQESDEDDA AKKKRKPRRR RRKKPAGDAP AGDDDENADS
DDDGSDTSSA PESEPGDAEE SRK
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