| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_0317 |
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| Symbol | |
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| ID | 8533437 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 328797 |
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| End bp | 333002 |
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| Gene Length | 4206 bp |
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| Protein Length | 1401 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 646382700 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_003262227 |
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| Protein GI | 261854944 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0457997 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGAAT TACTCAACCT GATGAGTCGT GAAGTGACCG ATGATGATTT CGATGGTATT
CGAATCTCTC TGTCCTCACC GGAGATGATC CGCTCATGGT CGTACGGCGA AGTTAAAAAG
CCGGAAACCA TCAATTATCG TACCTTCAAG CCGGAACGCG ACGGCCTGTT CTGCGCCAAG
ATCTTTGGCC CCGTGCGGGA TTACGAATGC TTGTGCGGCA AGTACAAGCG TTTGAAGCAC
CGCGGTGTGG TCTGCGAAAA ATGCGGCGTT GAAGTCACGC TGTCCAAAGT GCGTCGTGAG
CGCATGGGTC ATATCGAACT GGCATGCCCG GTTGCGCACA TTTGGTACCT CAAATCGCTG
CCTTCGCGCA TCGGCTTGCT GCTGGACATG ACCCTGCGCG ACATCGAGCG CGTGCTTTAT
TTCGAAGCGT TTGTGATCAC CGATCCTGGC ATGACCACTC TGAACAAGGG TGATCTTCTG
ACCGATGAAA TGTACATCGA CGCGATTGAA CAATTCGGTG ACGAATTCGA AGCGGACATG
GGCGCAGAAG CCATCCAGAA ACTGCTCAAG GACATTGATC TGGATCAGCA GATCCTGACC
CTGCGCGATG AATTGGCGAG CACTGGTTCT GAAACCAAGA TCAAACGCTT GTCCAAGCGT
TTGAAGCTGA TCGAGGCATT CAAGGAGTCC GGCAACCGCC CCGAGTGGAT GGTTCTGACC
CAATTGCCGG TGCTGCCGCC CGATCTGCGT CCGTTGGTGC CGCTGGATGG TGGTCGTTTC
GCGACTTCCG ATCTTAACGA CCTGTATCGT CGCGTCATCA ACCGTAACAA CCGCCTCAAG
CGTCTGATCG AAATCAATGC GCCGGACATC ATCCTGCGTA ACGAAAAGCG GATGCTGCAG
GAATCGGTTG ACTCTCTGTT GGATAACGGT CGTCGTGGCC GTGCCGTTAC CGGCACCAAC
AAGCGTCCGC TGAAGTCCTT GGCCGACATG ATCAAGGGTA AGCAGGGTCG CTTCCGTCAG
AACCTGCTCG GTAAGCGTGT GGATTACTCT GGCCGTTCGG TCATCGTGGT TGGCCCGACG
CTGCGTCTGC ATCAGTGCGG CCTGCCCAAG AAAATGGCTT TGGAACTCTT CAAGCCGTTC
ATCTTCGGTA AGTTGCACCG TCGCGGCCTC GCGACCACCA TCAAGGCGGC CAAGAAACTG
GTTGAGCGTG AAGGTCCGGA AGTTTGGGAC GTACTCGAAG AAGTCATCCG CGAACATCCG
GTATTGCTGA ACCGCGCGCC AACTTTGCAT CGTTTAGGTA TCCAGGCGTT CGAGCCGATC
CTGATCGAAG GTAAGGCTAT TCAGTTGCAC CCGCTCGTTT GCTCGGCCTA CAACGCCGAC
TTCGACGGTG ACCAGATGGC CGTCCACGTG CCGTTGTCGC TCGAAGCTCA GGCCGAAGCC
CGTGCCCTGA TGATGTCCAC GAACAACGTG CTGTCGCCTG CGAACGGTGA CCCGGTGATC
GTGCCGTCAC AGGATATCGT ATTGGGTATC TACTACATGA CGCGCGCCAA GGTAAATGGC
CGTGGCGAAG GCATGGTGTT TGCGGATCTG GATGAAGTTC AGCGCGCCTA CGACAACCAT
CAGGTCGAGC TGGGTGCTCA GATCAAAGTA CGTGTCAACG ACTGGATTCG TTATGACGAC
GGGACAGCCG AATCCGTTCG CCATATTCTT GAGACAACCG TAGGCCGTGC CCTGCTGTAC
AAGGCATTGC CAGAAGGCGT GCCGTTTGAG CAGATCAACA AGGATATGGG CAAGAAAGCC
ATCTCTGCAC TGTTGAACTA CGTCTACCGT CAGTTGGGTC TGAAAGACAC CGTTCTGTTT
GCGGATCAGT TGATGTACAC CGGCTTCCGT TACGCGACGC GTTCCGGCAT TTCGATCTGC
TCGGATGACA TGTTGGTTCC ACCTTCCAAG CCGGCCGAAT TGGCAAAAGC AGAAGCCGAA
GTGGGTGAAA TCCAAAACCA GTACTCACAA GGTTTGGTTA CGGAAAAAGA GCGTTACAAC
AAAGTGGTCG ACATCTGGTC ACGGGCAAAC GATCAAATTT CGCGCGCGAT GATGGAGCAG
TTGGGTACCG AAAAGGTCGT CGACCGTGAA GGTAATACCG TCAAGCAAAG CTCGTTCAAC
GCGATCTTCA TGATGGCAGA TTCCGGTGCG CGGGGTTCCG CGGCCCAGAT TCGTCAGTTG
GCCGGTATGC GTGGTTTGAT GACCAAACCG GATGGCTCGA TCATCGAAAC GCCCATCACT
GCTAACTTCC GCGAAGGCCT GAACGTACTC CAGTACTTCA TTTCAACGCA CGGTGCGCGT
AAAGGTCTGG CCGATACGGC ATTGAAGACG GCGAACTCGG GTTACCTCAC CCGTCGTCTG
GTCGATGTGG CGCAAGATAT CGTGATCACT ATCGATGACT GCGGCACGCA ATCACCGGGA
CTTAAAGTCA CTGCCGTCAT TGAAGGCGGT GACGTGGTTC AGGGCCTGGG CGCCCGTATA
CTTGGACGCA CCACATCTCA AGACGTGTTG ATGCCAGGCT CCGATGAAGT GCTCGTGCCA
TCGGGTACCG TGATCAATGA AGTGCTGGTC GCCCGTCTTG AAGAGTCGGG TGTGGATGAG
GTGTGGGTTC GTACACCGAT TGGTTGCGAA TCGCGTCATG GTATTTGCCA GAAGTGCTAC
GGTCGCGATC TTGCCCGCGG CAACCTCGTG AACATCGGTG AGTCCGTCGG CGTTATTGCC
GCGCAGTCCA TCGGTGAACC GGGTACCCAG TTGACCATGC GTACCTTCCA CATTGGTGGT
GCCGCATCCC GTTCTGCATC AGCCAGTTCC GTGCAGAACA AGGCGGCGGG TGTCGTTCGC
CTGCACAACC TTAAAACGGT GAAGAATCGC GATAACGATC TGGTCGCAGT CACTCGTTCG
GGCGAATTGG GCATGATCGA TGATCAAGGC CGTGAGCGTG AGCGTTACAA AATTCCTTAC
GGCGCGGTCA TCCGGGTCAA GGAAGGCGAA AAAGTTGCCG GTGGTACCAC CCTGGCTACT
TGGGATCCGC ACACGCATCC CGTTGTCAGT GAAATGCAGG GCCAGGCCCG TTTCTCTGAT
TTCGTGGACG GTCAGTCGGT CAAATCCGAT ACCGATGAAA TCACGGGTCT GTCCTCTCAA
GTGGTCATTG ATCCGAAGCA TCGCAATAGT GCTGCCAAGG AATTGCGCCC GGCCATCGCC
TTGATCGATG ACGCTGGTGA GCCGGTCTGC CTGGCTGGTA CCGACATCCC CGCGTTCTAT
GTGCTCCCTG CCGGCGCGAT TATCGGTATT GAGGATGGCG CCGCCGTTCA GGTGGGTGAC
ATCATCGCGC GTATTCCTCA GGAATCGTCG AAGACGCGTG ACATCACCGG TGGTCTGCCT
CGCGTTGCCG ACTTGTTCGA GGCTCGTAAA CCGAAAGAAC CGGCCATTCT GGCGGAGTAC
ACCGGTACGA TCAGCTTCGG CAAGGAAACC AAAGGCAAGC AGCGTCTGGT CATAACCGAC
GAGCATGGTG AAGCGCATGA AGAGCTGATT CCAAAATACC GCGTCATCAA CGTATTCGAA
GGTGAGCACG TGGCGCGTGG TGAAGTTATC GCCGATGGTG AGTTGACGCC ACACGACATT
CTGCGTCTGC GCGGCATTCC GGATCTGGCT GCGTACATCA TCAAGGAAAT TCAGGACGTC
TACCGCCTAC AGGGCGTTAT CATCAGCGAC AAGCACATCG AAGTGATTGT GCGTCAGATG
CTGCGCAAGG TCGAAATCAG CGAACCGGGT GATTCCGGCT ATCTGCGCGG TGATCAGGTG
GACAAGGCGC GTTTGCTTGA AGAGAACCGC ATGCTCGAGC AGGCCGGTAA GTTCGCCGCG
AAGTTCGATC CGATGCTGCT GGGTATTACC AAAGCGTCAC TGGTTACCGA GTCGTTCATT
TCGGCAGCCT CGTTCCAGGA GACGACACGT GTCCTGACCG ACTCGTCTAC CCGAGGCGCT
CGAGATGAAC TGCGTGGCTT GAAGGAAAAC GTCATTGTGG GGCGTCTCAT CCCCGCAGGG
ACTGGCTTGG CTCATCACCA AGAGCGCCGT CGCCGTCGTC ATTTGACGAT GGATTCGGCC
AACGCCTTGT TCATGGATAG CGATTCTTCG GATGCGCGTG TCGATGAAGG GGAAAACGTA
TCGTAA
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| Protein sequence | MKELLNLMSR EVTDDDFDGI RISLSSPEMI RSWSYGEVKK PETINYRTFK PERDGLFCAK
IFGPVRDYEC LCGKYKRLKH RGVVCEKCGV EVTLSKVRRE RMGHIELACP VAHIWYLKSL
PSRIGLLLDM TLRDIERVLY FEAFVITDPG MTTLNKGDLL TDEMYIDAIE QFGDEFEADM
GAEAIQKLLK DIDLDQQILT LRDELASTGS ETKIKRLSKR LKLIEAFKES GNRPEWMVLT
QLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLIEINAPDI ILRNEKRMLQ
ESVDSLLDNG RRGRAVTGTN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVIVVGPT
LRLHQCGLPK KMALELFKPF IFGKLHRRGL ATTIKAAKKL VEREGPEVWD VLEEVIREHP
VLLNRAPTLH RLGIQAFEPI LIEGKAIQLH PLVCSAYNAD FDGDQMAVHV PLSLEAQAEA
RALMMSTNNV LSPANGDPVI VPSQDIVLGI YYMTRAKVNG RGEGMVFADL DEVQRAYDNH
QVELGAQIKV RVNDWIRYDD GTAESVRHIL ETTVGRALLY KALPEGVPFE QINKDMGKKA
ISALLNYVYR QLGLKDTVLF ADQLMYTGFR YATRSGISIC SDDMLVPPSK PAELAKAEAE
VGEIQNQYSQ GLVTEKERYN KVVDIWSRAN DQISRAMMEQ LGTEKVVDRE GNTVKQSSFN
AIFMMADSGA RGSAAQIRQL AGMRGLMTKP DGSIIETPIT ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDIVIT IDDCGTQSPG LKVTAVIEGG DVVQGLGARI
LGRTTSQDVL MPGSDEVLVP SGTVINEVLV ARLEESGVDE VWVRTPIGCE SRHGICQKCY
GRDLARGNLV NIGESVGVIA AQSIGEPGTQ LTMRTFHIGG AASRSASASS VQNKAAGVVR
LHNLKTVKNR DNDLVAVTRS GELGMIDDQG RERERYKIPY GAVIRVKEGE KVAGGTTLAT
WDPHTHPVVS EMQGQARFSD FVDGQSVKSD TDEITGLSSQ VVIDPKHRNS AAKELRPAIA
LIDDAGEPVC LAGTDIPAFY VLPAGAIIGI EDGAAVQVGD IIARIPQESS KTRDITGGLP
RVADLFEARK PKEPAILAEY TGTISFGKET KGKQRLVITD EHGEAHEELI PKYRVINVFE
GEHVARGEVI ADGELTPHDI LRLRGIPDLA AYIIKEIQDV YRLQGVIISD KHIEVIVRQM
LRKVEISEPG DSGYLRGDQV DKARLLEENR MLEQAGKFAA KFDPMLLGIT KASLVTESFI
SAASFQETTR VLTDSSTRGA RDELRGLKEN VIVGRLIPAG TGLAHHQERR RRRHLTMDSA
NALFMDSDSS DARVDEGENV S
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