Gene Hneap_0299 details

Gene Information

• Locus tag: Hneap_0299
• ID: 8533414
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halothiobacillus neapolitanus c2
• Kingdom: Bacteria
• Replicon accession: NC_013422
• Strand: -
• Start bp: 308958
• End bp: 310787
• Gene Length: 1830 bp
• Protein Length: 609 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 646382677
• Product: ATP-dependent DNA helicase RecQ
• Protein accession: YP_003262209
• Protein GI: 261854926
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0514] Superfamily II DNA helicase
• TIGRFAM ID: [TIGR00614] ATP-dependent DNA helicase, RecQ family; [TIGR01389] ATP-dependent DNA helicase RecQ

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.236448
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCCTA ACGTCATCTC ATCACCACTG CATATTCTCA ACACGGTTTT CGGCTATCCC 
GCTTTTCGGG GGCCGCAGGC CGAGGTGATC GATACCGTGA TGAGTGGTCG TGACGCACTC 
GTGTTAATGC CGACAGGTGG CGGCAAATCA TTGTGTTATC AGGTGCCTGC GCTCGCGCTG 
TCCGGCACGG CCATCGTCGT ATCGCCGCTC ATTGCGCTGA TGCAAGATCA AGTGGCGGCA 
CTGCGCCAGG CGGGCGTTGC GGCTGCGTTT CTCAACTCCA CACAAACGGG CGAAGAAGCG 
CAATTAGTGC GAAAACAATT ACGCGCGGGC ACGCTCGATT TACTTTACGT CGCACCGGAA 
CGCCTGCTCA ATGCCGACAC CTTATCGCTG TTACGCGACG CCTCCATCAA CCTGATCGCC 
ATCGACGAAG CACACTGCGT CTCGCAATGG GGACATGATT TTCGCCCTGA ATACATTCGT 
TTGGGTGAAT TGGGCCAATA TTTTCCCGAC ATACCCCGCA TCGCACTCAC GGCCACCGCA 
GACGGAACCA CCCAACAAGA AATCCTGTAT CGCCTCGGGT TGAACAATGC GCGGGTGTTC 
ATCAGCAGCT TTGATCGGCC CAATATCCGC TATCACATCG CGCAGAATCA CGCAGGCAGC 
GCCAGAGACG CCCTGTTGCG ATTTATCCGC GACAACCACG CCAACGAGGC GGGCATTGTC 
TACTGTCTGT CGCGCAAGCG GGTAGAAGAA ATCGCTGCCT GGCTGAGCGA TCAAGGGCTC 
ACCGCCTTGG CATACCACGC CGGTCTTCCC GCCACTCAAC GCGAACAGAC ACTGCGACGA 
TTTCTCGACG AAGACGGCGT CATCGTGGTC GCGACCATCG CCTTCGGCAT GGGCATCGAC 
AAGCCCGATG TACGTTTTGT CGCACACCTG AATCTCCCCA AAAGCATCGA GGCTTATTAT 
CAGGAAACGG GGCGCGCGGG GCGGGACGGC CTGCCCGCCG AAGCCTGGAT GCGCTACGGA 
TTACAAGATG TGATCACCCT GCGCCAGATG ATGAGCGAAT CCAATGCCGA CGAAGCCATC 
AAGCGGATCG AGCAACACAA GCTCGATGCC ATGCTGGGGT TATCCGAATC CACCGCATGT 
CGACGCCAGA CCCTGCTCGG ATACTTCGGC GAGCAGAGCA CCGAACCCTG CGGCAACTGC 
GACAACTGCC TGACACCACC GCAAATGTGG GACGCAACTC TGCCCGCCCG TCAGGCGCTT 
TCCACCGTGC ATCGCACCGG CCAACGCTTC GGTGTGAATT ATCTGATCGA CGTATTACGC 
GGCAAGACCG ACGAGCGCAT CACGCAACTC GGCCACGACA AGCTCAGCGT GTTCGGCGTC 
GGCCACGCGC ACACCATCGA TATCTGGCGC GGCATATTCC GCCAGCTAAT CGCTCAAGGA 
TATCTAAGCG TGGACACGGA AGGATTTGGC GGTTTGGCGC TTTGCGAACG TTGCCGCCCA 
CTCTTGCGCG GCGAAGAATC GCTTTGGCTC AGGCAAATAA CCAAACCGGT CAAAATCAGC 
CGCAAAACGC GCGACCGTCC CGATTTTGTA TCCGACGAGG AAAGCGAGCT TTGGGAAGCC 
TTGCGCGCCT GCCGCAAACG ACTGGCGACC GAACGCGGCG TGCCGCCATA CACCATTTTC 
CACGATGCCT CGCTGCTCGA CATGCTGCAC GCGCGACCCA CAACGCTCGA CGCGTTCACC 
GATATCTCCG GTGTCGGCGC CCACAAGCGG GATACGTATG GCGCTGCGTT TTTATCTGTC 
ATTGCGCCGT TTGTTCGACG AACACGTTAA 

 

Protein sequence

MNPNVISSPL HILNTVFGYP AFRGPQAEVI DTVMSGRDAL VLMPTGGGKS LCYQVPALAL 
SGTAIVVSPL IALMQDQVAA LRQAGVAAAF LNSTQTGEEA QLVRKQLRAG TLDLLYVAPE 
RLLNADTLSL LRDASINLIA IDEAHCVSQW GHDFRPEYIR LGELGQYFPD IPRIALTATA 
DGTTQQEILY RLGLNNARVF ISSFDRPNIR YHIAQNHAGS ARDALLRFIR DNHANEAGIV 
YCLSRKRVEE IAAWLSDQGL TALAYHAGLP ATQREQTLRR FLDEDGVIVV ATIAFGMGID 
KPDVRFVAHL NLPKSIEAYY QETGRAGRDG LPAEAWMRYG LQDVITLRQM MSESNADEAI 
KRIEQHKLDA MLGLSESTAC RRQTLLGYFG EQSTEPCGNC DNCLTPPQMW DATLPARQAL 
STVHRTGQRF GVNYLIDVLR GKTDERITQL GHDKLSVFGV GHAHTIDIWR GIFRQLIAQG 
YLSVDTEGFG GLALCERCRP LLRGEESLWL RQITKPVKIS RKTRDRPDFV SDEESELWEA 
LRACRKRLAT ERGVPPYTIF HDASLLDMLH ARPTTLDAFT DISGVGAHKR DTYGAAFLSV 
IAPFVRRTR