Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hneap_0276 |
Symbol | |
ID | 8533391 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halothiobacillus neapolitanus c2 |
Kingdom | Bacteria |
Replicon accession | NC_013422 |
Strand | + |
Start bp | 281209 |
End bp | 282558 |
Gene Length | 1350 bp |
Protein Length | 449 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 646382654 |
Product | outer membrane efflux protein |
Protein accession | YP_003262186 |
Protein GI | 261854903 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0967709 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCTTTCT TATCGCCTTC GCCGTGGTGT TTGACCCGGT GGGTTTTGAC TCGGAGCCTG ATGCCGATTC AGCATTCGTT GCGCACGCTG GGCATGTTGC TGATCGTTAT CCTCGCTCTG TCGGGGCTGG CACAAGCCGG TCAGAACACG TCGGGTCGTT CAGAACAACC CGTCTTTTCA ATAAGTCCGG ATGCCACGCT TTCACTTCAG GAAGCCGAAC AGTTGGCGGT GCAGAATGAT CAGGGTTTGG CTGCTGCGGT AGCGACCGAA TCGGCAGAAA CCAGTTCGGC CAAGGCGGCC GATCAACTGC CCGACCCTGA GATTTCGCTC GGTGTATCGA GTCTGCCGCT CGATACCTTC AGTTTCACGC AGACGCCCAT GACGACCACG GAGGTCTCGA TCAGCCAGTC TTTGCCACCG GGCGACACCT TGGCGCAGCG TGCCCTGGCC GCCGACGCGA AGATACAGGC CGCAACCGCA AACATCGCCG TGCAGCAACA GATACTGCGG CGTGAAGTGG GCCGGTTCTG GTTGACCGTC TACCGCGATC AGCAAACGCT GGCGCTGCTT GCACAGGAGA AGTCGTTGTA TCAGCGCCTT CTGCGCAGTG CGCAAACGGC CTACAGCACC GGACGGGCCC GAGCGACGGA TCTGGTTCGA TTGCAAGTGC GCTTGGCGGA ACTGGATGAT CGCATCGACC GCCAGCGGGG CAGTACGGCG GCGACGAAAG CACGCCTGGC CCGCTGGATC GGGGCACGGG CACAGCAAGA TTGGCCCACG GCTCTGCCTT CCGCGCTGAC AACCCTGCCC GAGGGGTCTG TGGAGCATCA ACCTGAAATC AAAGCCTTGC AGGCGAATCT GGCCGAGGCC CGCGCGCAAA CGGGCGAGGC GCGTGCCGCG TTCAAACCGA AGTTCGGTGT CTCGCTCGGG TACGGCATCA AGGCGGGCAA CCAGCCGGAT ACGGTGAGTG TGGGGGTGAG CATGAGCTTG CCGCTCTTCA CCGGTGAACG CCAGGCGCCC CTGCTGGCGG CGGCGCAAAA ACGGCAACAG GCGCGGCAAT TGGCGCTGGA AAGCCGTGCC GCCGATTTTC ATGCCGAGGC GCAGTCGCTC AACGCCGATG TGGACAGCCT GACGAGTCGG ATCGATCGTT ACGATCGGCA GATTCTGCCT AAACTCAGGC AGGTCGCGAC CTTGGCGCAA AACCAGTTTG GCTCTGGCAG CGGAGATTTT ACGGCCATTA TCGATGCTGA ACAGGCCGAA ATTACCGGTC GTCAACAACG CCTCGATTTA ACGATTGATC GCGCCCAACG CTTGATCGAT CTGCGTTACC TTCTGGAGAA TCCCGCATGA
|
Protein sequence | MPFLSPSPWC LTRWVLTRSL MPIQHSLRTL GMLLIVILAL SGLAQAGQNT SGRSEQPVFS ISPDATLSLQ EAEQLAVQND QGLAAAVATE SAETSSAKAA DQLPDPEISL GVSSLPLDTF SFTQTPMTTT EVSISQSLPP GDTLAQRALA ADAKIQAATA NIAVQQQILR REVGRFWLTV YRDQQTLALL AQEKSLYQRL LRSAQTAYST GRARATDLVR LQVRLAELDD RIDRQRGSTA ATKARLARWI GARAQQDWPT ALPSALTTLP EGSVEHQPEI KALQANLAEA RAQTGEARAA FKPKFGVSLG YGIKAGNQPD TVSVGVSMSL PLFTGERQAP LLAAAQKRQQ ARQLALESRA ADFHAEAQSL NADVDSLTSR IDRYDRQILP KLRQVATLAQ NQFGSGSGDF TAIIDAEQAE ITGRQQRLDL TIDRAQRLID LRYLLENPA
|
| |