| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_0252 |
|---|
| Symbol | |
|---|
| ID | 8533367 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | - |
|---|
| Start bp | 257371 |
|---|
| End bp | 258576 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 646382630 |
|---|
| Product | succinyldiaminopimelate transaminase |
|---|
| Protein accession | YP_003262162 |
|---|
| Protein GI | 261854879 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | [TIGR03538] succinyldiaminopimelate transaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCTG ATCTGACCCG CCTGCACCCG TACCCGTTCG AAAAACTGGC CGAGCTCAAG
GCTGGAATCT CGCCCGCCAC TTCAGACAAA CCCATCGCCT TGTCGATTGG CGAGCCGCAA
CACGCACCGC CCGCCGTTGC CATGCGCGCC ATGGCCGACT CACTTGGCGG TCTGTCGCGG
TACCCGCTCA CCAAGGGGGA ACGCAGCCTG CGCGAGACCA TCGGGCACTG GTTGACGCGG
CGCTTTGCGC TCGAACCCGG GCTGGTCGAT CCGGATCGTC ACGTGCTCCC GGTAGCGGGC
ACGCGCGAAG CCCTGTTCTC GTTTGCTCAA GCCGTAGTTG CGCGCCCGGA AGACCCCGCA
GCCCCGCGCC CTGTGGTGCT CATGCCCAAT CCGTTTTACC AGATTTACGA AGGCGCCGCG
CTGCTGGCCG GAGCCGAACC TTATTATTAC CCAACGACCA GCGATACCGA CTTTTTACCC
GACTTTGCCG CCATTCCTGC TGAAATTTGG GCACGCGCGC AGTTGATTTA CGTTTGCTCG
CCCGGCAATC CGAGCGGGGC CGTGATCGAT CGCGCGCGCA TCAAGACGCT GTTCGATCTG
GCCGATCGCC ATGATGTGAT CATTGCCGCC GACGAATGCT ATTCCGAAAT TTATTTTGAT
GAAGATGCAC CGCCAGTCGG CTTCATTCAG GCGGCGCATG AATTGGGGCG CAGCGACTTC
AACCGGCTGG TGATCTTTCA CAGCCTCTCG AAGCGCTCCA ATCTGCCCGG TCTGCGCTCC
GGCTTCGTAG CGGGTGATGC CGAGATTCTG GCGCGCTACC TCAAATACCG CACCTATCAT
GGTTGCGCGC TCTCGCTCCC GGTGCAGATG ACCAGTATTG CCGCATGGAA CGACGAGGTG
CATGTGCATG AAAACCGCCA GCACTACCGC GAAAAATTCG ATGCCGTGCT GGACATCCTT
GCCCCGGTTC TGCCGGTACA GCGACCGGAT GCCGGTTTTT ATCTTTGGAC GGATGTCGGC
GGCGACGAGC GCAGCTTCGC CCGCGATTTG TTTGCGGAGC AGGCCGTCAC GGTACTGCCC
GGTCGCTTCC TTTCACGCCC GGTCGAAAGC AACGACCCCG GCGTCGGCTT CGTGCGCATG
GCGCTGGTTG CCGAATTGAT CGATTGCGTG GATGCCGCCC AACGGATTCG GGCGTTTCTC
AGCTAG
|
|---|
| Protein sequence | MNPDLTRLHP YPFEKLAELK AGISPATSDK PIALSIGEPQ HAPPAVAMRA MADSLGGLSR
YPLTKGERSL RETIGHWLTR RFALEPGLVD PDRHVLPVAG TREALFSFAQ AVVARPEDPA
APRPVVLMPN PFYQIYEGAA LLAGAEPYYY PTTSDTDFLP DFAAIPAEIW ARAQLIYVCS
PGNPSGAVID RARIKTLFDL ADRHDVIIAA DECYSEIYFD EDAPPVGFIQ AAHELGRSDF
NRLVIFHSLS KRSNLPGLRS GFVAGDAEIL ARYLKYRTYH GCALSLPVQM TSIAAWNDEV
HVHENRQHYR EKFDAVLDIL APVLPVQRPD AGFYLWTDVG GDERSFARDL FAEQAVTVLP
GRFLSRPVES NDPGVGFVRM ALVAELIDCV DAAQRIRAFL S
|
|---|
| |