Gene Hneap_0172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHneap_0172 
Symbol 
ID8533287 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothiobacillus neapolitanus c2 
KingdomBacteria 
Replicon accessionNC_013422 
Strand
Start bp174963 
End bp175553 
Gene Length591 bp 
Protein Length196 aa 
Translation table11 
GC content54% 
IMG OID646382550 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003262082 
Protein GI261854799 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.262176 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGGCCCAT CATCCTTTTT TTCTGGCTCA TTTCTATTCG GGCGATTGAC CTTCAATCAT 
CGCCTTGAGC AACTACGCCC TCGGCTGTAC CGCTTGGCCT TTTCGTGGTG CAAGGAGTCT
TATCTGGCAG AAGACCTGGT TCAGGAAGCC ATGATTCGTG CACTGCAAAA ACAGGCGCAG
CTCAGGGATG AAGAACTTCT GGATCGCTGG GTTATCCGCA TATTGGCCAA TCAGTGGATG
GATCATGTCC GCAGTCATGT TCGCGACGAG AACATTGACG ACATGGAGCA AACGATCTCA
ACCGACGAGC ATCAATCGCC AGACAGCGTG CATGGCCGGG ATGAAATGAT CGAACGCGTC
CGTAGCGCCG TGATGCGCTT GCCGGAAATG CAGCGGATTG TGGTCACGCT GGTCGATCTG
GAAGAATTCT CCTATAAGGA AGTCGCCACC ACACTCGACC TGCCGATCGG CACGATCATG
AGCCGTCTAT CGCGTGGCCG CCAGTCTTTA CGAAATCTCC TGATCGAAAC GAAAAATGCC
GCAACTGAGG AGCGCCGCAA AAGCGAGTGC CACCTGAGGA GAGTTGTATG A
 
Protein sequence
MGPSSFFSGS FLFGRLTFNH RLEQLRPRLY RLAFSWCKES YLAEDLVQEA MIRALQKQAQ 
LRDEELLDRW VIRILANQWM DHVRSHVRDE NIDDMEQTIS TDEHQSPDSV HGRDEMIERV
RSAVMRLPEM QRIVVTLVDL EEFSYKEVAT TLDLPIGTIM SRLSRGRQSL RNLLIETKNA
ATEERRKSEC HLRRVV