| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_0163 |
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| Symbol | |
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| ID | 8533277 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 164040 |
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| End bp | 166097 |
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| Gene Length | 2058 bp |
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| Protein Length | 685 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 646382541 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_003262074 |
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| Protein GI | 261854791 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0316123 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGTCTT CGTTACCTGA CTTGTTCTCC GCGCCGTCCG AGGATGGCGA CCGCGCCCGT
TTGCTTGCGC TGCGTGACGA AATCGAACGG CACAACTTCC GTTATTACGT GCTGGACGAT
CCTGAAATAA GCGATGCCGC CTTCGATCGG CTCATGCGTG AATTGCAGCA GATTGAATCC
GCTCACCCCG AATGGATCAC GCCGGATTCG CCCACCCAGC GAGTCGGCAG CCCGACATTT
ACCACCCGTT TCGCCCCCGT TACACATCAT CAGGCCATGT TGTCGCTGGA TAATGTGTTC
AGCGTCGAGG AATGGGATGC TTTTACCCAG CGTATTCAGG ATCGCTTGAA GCGCGATGCA
CCGCTCGTGT TTGCCGCCGA ACCTAAATTC GATGGCCTCG CGATCAACCT GATCTACCGT
CAGGGGCAGC TGGTGCAGGC CGCAACGCGC GGCGATGGAC AGACCGGCGA GGATGTGACC
TTGAACGTCC GCACCATCGC CGCCATTCCC CAGCAATTAC CGGATTCGCT GCTCTCCTGC
GATCTGCTGG AAGTGCGCGG TGAGATCGTC ATGTCGCACA AGGCCTTCGC CGCGCTGAAT
GCCGCCGCCG ATGCCCGTGG TGACAAACGC TTCGTGAACC CGAGGAACGC CGCCGCCGGC
TCCTTGCGGC AAAAGGACCC GCGAATAACG GCCAAGCGCC AGCTACAGTT TTTCGCCTAT
GGTGTGGGCG CGGTTGATGG CGCCGATTTG CCCGATAGCC AACTGGGCCT GCTCGATTGG
TTGGCCGATT TGGGGTTTAC CGTCAGCGAG TGGCGTCGCC GCTGCGAGGG GCGCGATGAG
GTGCTGGCCT ATCAGCAGGA AATGAGCGCG CGCCGGTCGC AACTCGATTA CGACATCGAT
GGCGTCGTGT TCAAAATCAA CGCCCAGTCC GAGCAGGATG CGCTGGGCTT TGTGGCCAAG
GCGCCGCGTT GGGCCATCGC ATTCAAGTTC CCGGCAGAAG AGGCCACAAG CCGCGTCCAC
GCGGTCGATT TTCAGGTAGG CCGCACCGGA GCGCTCACGC CGGTTGCGCG CATTGATCCG
GTGTTTGTCG GTGGGGTCAC GGTGTCTAAC ATCACCCTGC ACAATATCGA TGAAATTACG
CGCAAGGATA TTCGGATTGG CGATACGGTC GTTGTCCGGC GGGCAGGCGA TGTGATTCCC
GAAGTTGTTC GCGTGCTGCC TGAATTGCGC CCAGCCGATG CCCGCCTAGT GGCGCTGCCC
GCCACTTGCC CCGTTTGTGG TTCCGAAGTT GTTCGAGCAG AAGGTGAGGC CATAGCCCGT
TGCAGTGGCG GTCTTTTCTG CCCGGCCCAG CGCCGTGAGG CCATCAAGCA CTTCGCCAGT
CGCAAGGCGA TGAATATCGA TGGGCTAGGC GAAAAGTGGA TCGAACTGCT GCTCGAACAC
AAGCTGGTCG AGCATGTCGA TGATTTGTTT CATCTCACCG TGCCGCAGGT GTTGACCCTG
CCACGAATGG GTGAAAAATC CGCGCAGAAC CTTGTGGATG CCTTGTCTGC AGCCAAACAA
ACCACCTTGC CCCGTTTCTT GTATGCGCTG GGTATTCGGG AAGTGGGCGA GGTGACGGCT
GCGGGGCTGG CGGCTCACTT CCGTAATCTG GATGCGCTGA ACGCCGCGAC GCTTGAGGAT
CTGCAAGCCG TGCCGGATGT AGGGCCGGTG GTGGCGCAGC ACGTATTTAC GTTCCTGCGT
CAGCCACACA ATCAGGAAGT CATCCGCAAT CTGATCGATG CCGGAGTACA CTGGCCCGCC
ATCGTTGCAA CGGATGCGAA TGCATTGCCG CTTGCCGGCA GAACCTATGT GCTGACGGGT
ACGTTGGTTG GCATGTCGCG AGAAGAGGCA GGCGAACGGC TCAAGGCGCT GGGCGCAAAA
GTCAGCGGCA GCGTTTCCAG CAAAACCACC GCCGTGATCG CGGGGAGCGA GGCGGGCAGT
AAACTGACCA AAGCAAATGA TCTGGGCGTG CCCGTGCTGG ATGAAACCGA CTTGCAGAAA
CTACTAAGGA ATCTCTGA
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| Protein sequence | MASSLPDLFS APSEDGDRAR LLALRDEIER HNFRYYVLDD PEISDAAFDR LMRELQQIES
AHPEWITPDS PTQRVGSPTF TTRFAPVTHH QAMLSLDNVF SVEEWDAFTQ RIQDRLKRDA
PLVFAAEPKF DGLAINLIYR QGQLVQAATR GDGQTGEDVT LNVRTIAAIP QQLPDSLLSC
DLLEVRGEIV MSHKAFAALN AAADARGDKR FVNPRNAAAG SLRQKDPRIT AKRQLQFFAY
GVGAVDGADL PDSQLGLLDW LADLGFTVSE WRRRCEGRDE VLAYQQEMSA RRSQLDYDID
GVVFKINAQS EQDALGFVAK APRWAIAFKF PAEEATSRVH AVDFQVGRTG ALTPVARIDP
VFVGGVTVSN ITLHNIDEIT RKDIRIGDTV VVRRAGDVIP EVVRVLPELR PADARLVALP
ATCPVCGSEV VRAEGEAIAR CSGGLFCPAQ RREAIKHFAS RKAMNIDGLG EKWIELLLEH
KLVEHVDDLF HLTVPQVLTL PRMGEKSAQN LVDALSAAKQ TTLPRFLYAL GIREVGEVTA
AGLAAHFRNL DALNAATLED LQAVPDVGPV VAQHVFTFLR QPHNQEVIRN LIDAGVHWPA
IVATDANALP LAGRTYVLTG TLVGMSREEA GERLKALGAK VSGSVSSKTT AVIAGSEAGS
KLTKANDLGV PVLDETDLQK LLRNL
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