| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_4491 |
|---|
| Symbol | ligB |
|---|
| ID | 8532935 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | - |
|---|
| Start bp | 4925676 |
|---|
| End bp | 4927367 |
|---|
| Gene Length | 1692 bp |
|---|
| Protein Length | 563 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | NAD-dependent DNA ligase LigB |
|---|
| Protein accession | YP_003261790 |
|---|
| Protein GI | 261823684 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGCTCA GGATCAGCGC GTTTTTGATT ATCATCTTTG TTGGAAATAT CAGCAGTTTC
CCTGTGGTGG CAGCGGTGTG TCCCGACTGG GGGAACGTGC GTTCGAACAA AGAAATTACT
GCATTACGTC AGCAGCTAGA ACGGTGGGAT GACGTGTATT ACACCGAAGG TAAAAGCCCG
GTAGAGGATG ATGTTTATGA TCAACTGCGA GAACAGTTAA ACCAGTGGCT GAGCTGTTTT
CAGCCCCAAA ACGCAATTCC TGTCCGGTTA CCCGATAATG GCAAGCAACG TCATCCTGTT
GCCCATACGG GATTGAAAAA AGTGTCCGAT CGCGGGCGGT TGGTGCAATG GATCGCACAG
CGTGAGGGTT TATGGATTCA GCCAAAAGTT GATGGTGTAG CCATCACGCT GGTTTATCAG
CACGGCAAGC TCGTGTCTGC GGTGAGTAGA GGAAACGGTC TGCAAGGCGA AGATTGGACG
GAAAAAGTTC GTCTGATTCC GGGAATTCCT CATCTATTAA CCGGTGCACC TTCCTCATTA
GTATTACAAG GGGAGCTTTT CCTGAAGATG ACCGATCATC GACAGTATAC ACAGGGCGGT
GTTAATGCAC GCTCGGTCGT GGCTGGTGAA ATGCGTCGTC ATCAGCCATC CCCTGTGTTG
TCACAGATTA GTTTGTTTGT CTGGGAATGG CCGGATGGCC CAAAGGCGAT GCCCGAGCGT
TTGGAAAAAT TGAAGGAAAT GGGGTTTGCC ATGACCGCGG GCTATACCCA TGCGATTGAG
TCATTCGCCG ACGCCGAGAA ATGGCGTCAC TACTGGCATC ACAGCCCGCT GCCCTTCGTG
ACGGATGGCG TGGTCATTCG CCAGACTAAA GAACCGCAGG GACGCTATTG GCGTAACACA
TCGGCTGACT GGGCGATTGC GTGGAAATAT CCGCCCGTTC ATCAGGTTGC GGAAGTCACC
GATGTGGCAT TCTCTGTCGG ACGGACGGGT AAGATCGCCG TGGTGTTAAA GCTTAATCCT
ATGAAATTGG ATGATAAATT GGTCAGTCGG GTGAATGTGG GTTCGCTGTC TCGTTGGAAG
CAATGGGACG TGCAGCCCGG CGATCGCGTG AGTGTCAGTC TGGCGGGACA AGGGATTCCA
CGCCTGGATA GTGTAGCGTG GCGTGGGGCT GAACGGCCTG CTCTCGTTCC ACCCAATGAA
CATGATTTCC ATGCTTTTAG CTGTTTTCGC TATAGCGCGG TGTGCCAGCA GCAATTTCTG
GCGCGCTTAG TCTGGTTGAG TGGGGAGCAT GGTTTAAATC TGGCGGGGAT GCGTGACGGG
ATGTGGTTGC GTTTGATGCA ACATGATTTA CTGGGAGATG TACTGGCATG GCTATCTCTG
ACGGAGGCAC AGCTTAACGC CGTTAATGGC ATGGGTGATA AACGGGCGCG AGATATCTAT
ACGAGCTTGC AGTCGACACG GCAGGTGCCA CTATCTCGCT GGTTACTTGC ATTAGGTATT
CCTGTTCCCC GCTCAGCGCG TAGCGCATTG GATCATGCGG ATTGGCTGGC ATTACAGCAA
CGGACGGCGC AGCAGTGGCG ACAGTTTTCG GGCATTGGGG AGCGGCGTGC AGAAGAAATT
ATGGCGTTCC TGAACCATCC CATCGTCGTG GAGTTTATTG CCCGATTAGA GCGCGAAGGG
ATACATCGAT AA
|
|---|
| Protein sequence | MWLRISAFLI IIFVGNISSF PVVAAVCPDW GNVRSNKEIT ALRQQLERWD DVYYTEGKSP
VEDDVYDQLR EQLNQWLSCF QPQNAIPVRL PDNGKQRHPV AHTGLKKVSD RGRLVQWIAQ
REGLWIQPKV DGVAITLVYQ HGKLVSAVSR GNGLQGEDWT EKVRLIPGIP HLLTGAPSSL
VLQGELFLKM TDHRQYTQGG VNARSVVAGE MRRHQPSPVL SQISLFVWEW PDGPKAMPER
LEKLKEMGFA MTAGYTHAIE SFADAEKWRH YWHHSPLPFV TDGVVIRQTK EPQGRYWRNT
SADWAIAWKY PPVHQVAEVT DVAFSVGRTG KIAVVLKLNP MKLDDKLVSR VNVGSLSRWK
QWDVQPGDRV SVSLAGQGIP RLDSVAWRGA ERPALVPPNE HDFHAFSCFR YSAVCQQQFL
ARLVWLSGEH GLNLAGMRDG MWLRLMQHDL LGDVLAWLSL TEAQLNAVNG MGDKRARDIY
TSLQSTRQVP LSRWLLALGI PVPRSARSAL DHADWLALQQ RTAQQWRQFS GIGERRAEEI
MAFLNHPIVV EFIARLEREG IHR
|
|---|
| |